The MAL-ED study: a multinational and multidisciplinary approach to understand the relationship between enteric pathogens, malnutrition, gut physiology, physical …

Clinical Infectious Diseases, 2014 - academic.oup.com
Highly prevalent conditions with multiple and complex underlying etiologies are a challenge
to public health. Undernutrition, for example, affects 20% of children in the developing world …

Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease

CL Relton, G Davey Smith - International journal of …, 2012 - academic.oup.com
The burgeoning interest in the field of epigenetics has precipitated the need to develop
approaches to strengthen causal inference when considering the role of epigenetic …

Computational solutions to large-scale data management and analysis

EE Schadt, MD Linderman, J Sorenson, L Lee… - Nature reviews …, 2010 - nature.com
Today we can generate hundreds of gigabases of DNA and RNA sequencing data in a week
for less than US $5,000. The astonishing rate of data generation by these low-cost, high …

Genetics of gene expression and its effect on disease

V Emilsson, G Thorleifsson, B Zhang, AS Leonardson… - Nature, 2008 - nature.com
Common human diseases result from the interplay of many genes and environmental
factors. Therefore, a more integrative biology approach is needed to unravel the complexity …

[HTML][HTML] Metabolic phenotyping in health and disease

E Holmes, ID Wilson, JK Nicholson - Cell, 2008 - cell.com
Analyzing metabolites (small molecules< 1 kDa) in body fluids such as urine and plasma
using various spectroscopic methods provides information on the metabotype (metabolic …

Mapping complex disease traits with global gene expression

W Cookson, L Liang, G Abecasis, M Moffatt… - Nature Reviews …, 2009 - nature.com
Variation in gene expression is an important mechanism underlying susceptibility to
complex disease. The simultaneous genome-wide assay of gene expression and genetic …

Mapping the pathogenesis of periodontitis: a new look

KS Kornman - Journal of periodontology, 2008 - Wiley Online Library
Chronic adult periodontitis is a bacterially induced chronic inflammatory disease that
destroys the connective tissue and bone that support teeth. Concepts of the specific …

Molecular networks as sensors and drivers of common human diseases

EE Schadt - Nature, 2009 - nature.com
The molecular biology revolution led to an intense focus on the study of interactions
between DNA, RNA and protein biosynthesis in order to develop a more comprehensive …

Tree-guided group lasso for multi-response regression with structured sparsity, with an application to eQTL mapping

S Kim, EP Xing - 2012 - projecteuclid.org
The balanced weighting scheme of tree lasso and additional experimental results. We prove
that the weighting scheme of the tree-lasso penalty achieves a balanced penalization of all …

Functional organization of the transcriptome in human brain

MC Oldham, G Konopka, K Iwamoto, P Langfelder… - Nature …, 2008 - nature.com
The enormous complexity of the human brain ultimately derives from a finite set of molecular
instructions encoded in the human genome. These instructions can be directly studied by …