Using molecular classification to predict gains in maximal aerobic capacity following endurance exercise training in humans

JA Timmons, S Knudsen, T Rankinen… - Journal of applied …, 2010 - journals.physiology.org
A low maximal oxygen consumption (V̇o2max) is a strong risk factor for premature
mortality. Supervised endurance exercise training increases V̇o2max with a very wide …

The architecture of gene regulatory variation across multiple human tissues: the MuTHER study

AC Nica, L Parts, D Glass, J Nisbet, A Barrett… - PLoS …, 2011 - journals.plos.org
While there have been studies exploring regulatory variation in one or more tissues, the
complexity of tissue-specificity in multiple primary tissues is not yet well understood. We …

Weighted gene coexpression network analysis: state of the art

W Zhao, P Langfelder, T Fuller, J Dong… - Journal of …, 2010 - Taylor & Francis
Weighted gene coexpression network analysis (WGCNA) has been applied to many
important studies since its introduction in 2005. WGCNA can be used as a data exploratory …

Integration of metabolomics and transcriptomics revealed a fatty acid network exerting growth inhibitory effects in human pancreatic cancer

G Zhang, P He, H Tan, A Budhu, J Gaedcke… - Clinical cancer …, 2013 - AACR
Purpose: To identify metabolic pathways that are perturbed in pancreatic ductal
adenocarcinoma (PDAC), we investigated gene-metabolite networks with integration of …

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

J Zhu, B Zhang, EN Smith, B Drees, RB Brem… - Nature …, 2008 - nature.com
A key goal of biology is to construct networks that predict complex system behavior. We
combine multiple types of molecular data, including genotypic, expression, transcription …

Host–microbial interactions in idiopathic pulmonary fibrosis

PL Molyneaux, SAG Willis-Owen, MJ Cox… - American journal of …, 2017 - atsjournals.org
Rationale: Changes in the respiratory microbiome are associated with disease progression
in idiopathic pulmonary fibrosis (IPF). The role of the host response to the respiratory …

An official American Thoracic Society Workshop report: obesity and asthma

AE Dixon, F Holguin, A Sood, CM Salome… - Proceedings of the …, 2010 - atsjournals.org
Rationale: The developed world is currently facing an epidemic of obesity. With the
increased prevalence of obesity has come the recognition that obesity is a risk factor for …

Systems vaccinology

B Pulendran, S Li, HI Nakaya - Immunity, 2010 - cell.com
Vaccination is one of the greatest triumphs of modern medicine, yet we remain largely
ignorant of the mechanisms by which successful vaccines stimulate protective immunity …

The biomarker GlycA is associated with chronic inflammation and predicts long-term risk of severe infection

SC Ritchie, P Würtz, AP Nath, G Abraham… - Cell systems, 2015 - cell.com
The biomarker glycoprotein acetylation (GlycA) has been shown to predict risk of
cardiovascular disease and all-cause mortality. Here, we characterize biological processes …

Application of weighted gene co-expression network analysis for data from paired design

J Li, D Zhou, W Qiu, Y Shi, JJ Yang, S Chen, Q Wang… - Scientific reports, 2018 - nature.com
Investigating how genes jointly affect complex human diseases is important, yet challenging.
The network approach (eg, weighted gene co-expression network analysis (WGCNA)) is a …