Integrative eQTL-based analyses reveal the biology of breast cancer risk loci

Q Li, JH Seo, B Stranger, A McKenna, I Pe'Er… - Cell, 2013 - cell.com
Germline determinants of gene expression in tumors are infrequently studied due to the
complexity of transcript regulation caused by somatically acquired alterations. We performed …

Integrative genomics reveals novel molecular pathways and gene networks for coronary artery disease

VP Mäkinen, M Civelek, Q Meng, B Zhang, J Zhu… - PLoS …, 2014 - journals.plos.org
The majority of the heritability of coronary artery disease (CAD) remains unexplained,
despite recent successes of genome-wide association studies (GWAS) in identifying novel …

Metabolic syndrome: from epidemiology to systems biology

AJ Lusis, AD Attie, K Reue - Nature Reviews Genetics, 2008 - nature.com
Metabolic syndrome (MetSyn) is a group of metabolic conditions that occur together and
promote the development of cardiovascular disease (CVD) and diabetes. Recent genome …

CHAC1/MGC4504 is a novel proapoptotic component of the unfolded protein response, downstream of the ATF4-ATF3-CHOP cascade

IN Mungrue, J Pagnon, O Kohannim… - The Journal of …, 2009 - journals.aai.org
To understand pathways mediating the inflammatory responses of human aortic endothelial
cells to oxidized phospholipids, we previously used a combination of genetics and genomics …

The landscape of multiscale transcriptomic networks and key regulators in Parkinson's disease

Q Wang, Y Zhang, M Wang, WM Song, Q Shen… - Nature …, 2019 - nature.com
Genetic and genomic studies have advanced our knowledge of inherited Parkinson's
disease (PD), however, the etiology and pathophysiology of idiopathic PD remain unclear …

Systematic genetic and genomic analysis of cytochrome P450 enzyme activities in human liver

X Yang, B Zhang, C Molony, E Chudin, K Hao… - Genome …, 2010 - genome.cshlp.org
Liver cytochrome P450s (P450s) play critical roles in drug metabolism, toxicology, and
metabolic processes. Despite rapid progress in the understanding of these enzymes, a …

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects

KR van Eijk, S de Jong, MPM Boks, T Langeveld… - BMC genomics, 2012 - Springer
Background The predominant model for regulation of gene expression through DNA
methylation is an inverse association in which increased methylation results in decreased …

Human diseases through the lens of network biology

LI Furlong - Trends in genetics, 2013 - cell.com
One of the challenges raised by next generation sequencing (NGS) is the identification of
clinically relevant mutations among all the genetic variation found in an individual. Network …

Toward a unifying hypothesis of metabolic syndrome

AA Bremer, M Mietus-Snyder, RH Lustig - Pediatrics, 2012 - publications.aap.org
Despite a lack of consistent diagnostic criteria, the metabolic syndrome (MetS) is
increasingly evident in children and adolescents, portending a tsunami of chronic disease …

Cancer‐associated fibroblasts predict poor outcome and promote periostin‐dependent invasion in oesophageal adenocarcinoma

TJ Underwood, AL Hayden, M Derouet… - The Journal of …, 2015 - Wiley Online Library
Interactions between cancer cells and cancer‐associated fibroblasts (CAFs) play an
important role in tumour development and progression. In this study we investigated the …