A Survey on Self-Supervised Pre-Training of Graph Foundation Models: A Knowledge-Based Perspective

Z Zhao, Y Li, Y Zou, R Li, R Zhang - arXiv preprint arXiv:2403.16137, 2024 - arxiv.org
Graph self-supervised learning is now a go-to method for pre-training graph foundation
models, including graph neural networks, graph transformers, and more recent large …

SE3Set: Harnessing equivariant hypergraph neural networks for molecular representation learning

H Wu, L Wu, G Liu, Z Liu, B Shao, Z Wang - arXiv preprint arXiv …, 2024 - arxiv.org
In this paper, we develop SE3Set, an SE (3) equivariant hypergraph neural network
architecture tailored for advanced molecular representation learning. Hypergraphs are not …

Holistic Molecular Representation Learning via Multi-view Fragmentation

S Kim, J Nam, J Kim, H Lee, S Ahn, J Shin - openreview.net
Learning chemically meaningful representations from unlabeled molecules plays a vital role
in AI-based drug design and discovery. In response to this, several self-supervised learning …