The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

C Kröger, SC Dillon, ADS Cameron… - Proceedings of the …, 2012 - National Acad Sciences
More than 50 y of research have provided great insight into the physiology, metabolism, and
molecular biology of Salmonella enterica serovar Typhimurium (S. Typhimurium), but …

[HTML][HTML] RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant …

S Ren, Z Peng, JH Mao, Y Yu, C Yin, X Gao, Z Cui… - Cell research, 2012 - nature.com
There are remarkable disparities among patients of different races with prostate cancer;
however, the mechanism underlying this difference remains unclear. Here, we present a …

Microfluidic single-cell whole-transcriptome sequencing

AM Streets, X Zhang, C Cao, Y Pang… - Proceedings of the …, 2014 - National Acad Sciences
Single-cell whole-transcriptome analysis is a powerful tool for quantifying gene expression
heterogeneity in populations of cells. Many techniques have, thus, been recently developed …

[图书][B] Plant roots: the hidden half

A Eshel, T Beeckman - 2013 - books.google.com
The decade since the publication of the third edition of this volume has been an era of great
progress in biology in general and the plant sciences in particular. This is especially true …

[HTML][HTML] VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster… - BMC …, 2018 - Springer
Background RNA sequencing has become a ubiquitous technology used throughout life
sciences as an effective method of measuring RNA abundance quantitatively in tissues and …

Genomics-driven oncology: framework for an emerging paradigm

LA Garraway - Journal of Clinical Oncology, 2013 - ascopubs.org
A majority of cancers are driven by genomic alterations that dysregulate key oncogenic
pathways influencing cell growth and survival. However, the ability to harness tumor genetic …

The power and promise of RNA‐seq in ecology and evolution

EV Todd, MA Black, NJ Gemmell - Molecular ecology, 2016 - Wiley Online Library
Reference is regularly made to the power of new genomic sequencing approaches. Using
powerful technology, however, is not the same as having the necessary power to address a …

[HTML][HTML] Fungal secondary metabolites in food and pharmaceuticals in the era of multi-omics

A Shankar, KK Sharma - Applied Microbiology and Biotechnology, 2022 - Springer
Fungi produce several bioactive metabolites, pigments, dyes, antioxidants, polysaccharides,
and industrial enzymes. Fungal products are also the primary sources of functional food and …

[HTML][HTML] Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

MJ López-Barragán, J Lemieux, M Quiñones… - BMC genomics, 2011 - Springer
Background It has been shown that nearly a quarter of the initial predicted gene models in
the Plasmodium falciparum genome contain errors. Although there have been efforts to …

[HTML][HTML] Long non-coding RNA in plants in the era of reference sequences

H Budak, SB Kaya, HB Cagirici - Frontiers in Plant Science, 2020 - frontiersin.org
The discovery of non-coding RNAs (ncRNAs), and the subsequent elucidation of their
functional roles, was largely delayed due to the misidentification of non-protein-coding parts …