Structural analysis of SARS-CoV-2 genome and predictions of the human interactome

A Vandelli, M Monti, E Milanetti, A Armaos… - Nucleic acids …, 2020 - academic.oup.com
Specific elements of viral genomes regulate interactions within host cells. Here, we
calculated the secondary structure content of> 2000 coronaviruses and computed> 100 000 …

Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity

Y Kanno, G Vahedi, K Hirahara… - Annual review of …, 2012 - annualreviews.org
T helper cell differentiation occurs in the context of the extracellular cytokine milieu evoked
by diverse microbes and other pathogenic stimuli along with T cell receptor stimulation. The …

Integrating genomics and genome editing for orphan crop improvement: a bridge between orphan crops and modern agriculture system

H Yaqoob, A Tariq, BA Bhat, KA Bhat, IB Nehvi… - GM Crops & …, 2023 - Taylor & Francis
Domestication of orphan crops could be explored by editing their genomes. Genome editing
has a lot of promise for enhancing agricultural output, and there is a lot of interest in …

A simple reverse transcriptase PCR melting-temperature assay to rapidly screen for widely circulating SARS-CoV-2 variants

P Banada, R Green, S Banik… - Journal of clinical …, 2021 - Am Soc Microbiol
The increased transmission of SARS-CoV-2 variants of concern (VOC), which originated in
the United Kingdom (B. 1.1. 7/alpha), South Africa (B1. 351/beta), Brazil (P. 1/gamma), the …

Atopic dermatitis displays stable and dynamic skin transcriptome signatures

L Möbus, E Rodriguez, I Harder, D Stölzl… - Journal of Allergy and …, 2021 - Elsevier
Background Skin transcriptome studies in atopic dermatitis (AD) showed broad
dysregulation as well as “improvement” under therapy. These observations were mainly …

[HTML][HTML] A Regulatory Network for miR156-SPL Module in Arabidopsis thaliana

C Zheng, M Ye, M Sang, R Wu - International Journal of Molecular …, 2019 - mdpi.com
Vegetative phase changes in plants describes the transition between juvenile and adult
phases of vegetative growth before flowering. It is one of the most fundamental mechanisms …

Tools for mapping high-throughput sequencing data

NA Fonseca, J Rung, A Brazma, JC Marioni - Bioinformatics, 2012 - academic.oup.com
Motivation: A ubiquitous and fundamental step in high-throughput sequencing analysis is
the alignment (mapping) of the generated reads to a reference sequence. To accomplish …

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

PAC 't Hoen, MR Friedländer, J Almlöf… - Nature …, 2013 - nature.com
RNA sequencing is an increasingly popular technology for genome-wide analysis of
transcript sequence and abundance. However, understanding of the sources of technical …

[HTML][HTML] RNA-Seq and human complex diseases: recent accomplishments and future perspectives

V Costa, M Aprile, R Esposito… - European Journal of …, 2013 - nature.com
The availability of the human genome sequence has allowed identification of disease-
causing mutations in many Mendelian disorders, and detection of significant associations of …

Comprehensive genetic analysis identifies a pathognomonic NAB2/STAT6 fusion gene, nonrandom secondary genomic imbalances, and a characteristic gene …

A Mohajeri, J Tayebwa, A Collin… - Genes …, 2013 - Wiley Online Library
Solitary fibrous tumor (SFT) is a mesenchymal neoplasm displaying variable morphologic
and clinical features. To identify pathogenetically important genetic rearrangements, 44 …