The Genome 10K Project: a way forward

KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …

Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

P Gladieux, J Ropars, H Badouin, A Branca… - Molecular …, 2014 - Wiley Online Library
Fungi are ideal model organisms for dissecting the genomic bases of adaptive divergence in
eukaryotes. They have simple morphologies and small genomes, occupy contrasting, well …

CAFE 5 models variation in evolutionary rates among gene families

FK Mendes, D Vanderpool, B Fulton, MW Hahn - Bioinformatics, 2020 - academic.oup.com
Motivation Genome sequencing projects have revealed frequent gains and losses of genes
between species. Previous versions of our software, Computational Analysis of gene Family …

Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum

A Song, J Su, H Wang, Z Zhang, X Zhang… - Nature …, 2023 - nature.com
Abstract Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important
ornamental plant with great economic, cultural, and symbolic value. However, research on …

The reference genome of tea plant and resequencing of 81 diverse accessions provide insights into its genome evolution and adaptation

E Xia, W Tong, Y Hou, Y An, L Chen, Q Wu, Y Liu, J Yu… - Molecular plant, 2020 - cell.com
Tea plant is an important economic crop, which is used to produce the world's oldest and
most widely consumed tea beverages. Here, we present a high-quality reference genome …

Chloranthus genome provides insights into the early diversification of angiosperms

X Guo, D Fang, SK Sahu, S Yang, X Guang… - Nature …, 2021 - nature.com
Chloranthales remain the last major mesangiosperm lineage without a nuclear genome
assembly. We therefore assemble a high-quality chromosome-level genome of Chloranthus …

Oak genome reveals facets of long lifespan

C Plomion, JM Aury, J Amselem, T Leroy, F Murat… - Nature plants, 2018 - nature.com
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

M Griesmann, Y Chang, X Liu, Y Song, G Haberer… - Science, 2018 - science.org
INTRODUCTION Access to nutrients such as nitrogen is required for plant growth. Legumes
and nine additional plant families benefit from the nitrogen-fixing root nodule (NFN) …

Six reference-quality genomes reveal evolution of bat adaptations

D Jebb, Z Huang, M Pippel, GM Hughes… - Nature, 2020 - nature.com
Bats possess extraordinary adaptations, including flight, echolocation, extreme longevity
and unique immunity. High-quality genomes are crucial for understanding the molecular …

The tea tree genome provides insights into tea flavor and independent evolution of caffeine biosynthesis

EH Xia, HB Zhang, J Sheng, K Li, QJ Zhang, C Kim… - Molecular plant, 2017 - cell.com
Tea is the world's oldest and most popular caffeine-containing beverage with immense
economic, medicinal, and cultural importance. Here, we present the first high-quality …