[HTML][HTML] A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

MM Halstead, C Kern, P Saelao, Y Wang… - BMC genomics, 2020 - Springer
Background Although considerable progress has been made towards annotating the
noncoding portion of the human and mouse genomes, regulatory elements in other species …

[HTML][HTML] Cell-type heterogeneity: Why we should adjust for it in epigenome and biomarker studies

L Qi, AE Teschendorff - Clinical Epigenetics, 2022 - Springer
Most studies aiming to identify epigenetic biomarkers do so from complex tissues that are
composed of many different cell-types. By definition, these cell-types vary substantially in …

Cell-type deconvolution analysis identifies cancer-associated myofibroblast component as a poor prognostic factor in multiple cancer types

B Li, G Pei, J Yao, Q Ding, P Jia, Z Zhao - Oncogene, 2021 - nature.com
Cancer-associated fibroblasts (CAFs) constitute a prominent component of the tumor
microenvironment and play critical roles in cancer progression and drug resistance …

Use of DNA methylation profiling in translational oncology

V Ortiz-Barahona, RS Joshi, M Esteller - Seminars in cancer biology, 2022 - Elsevier
DNA methylation is a highly regulated process that has a critical role in human development
and homeostatic control of the cell. The number of genes affected by anomalous DNA …

Epigenetics in eating disorders: a systematic review

C Hübel, SJ Marzi, G Breen, CM Bulik - Molecular psychiatry, 2019 - nature.com
Eating disorders are complex heritable conditions influenced by both genetic and
environmental factors. Given the progress of genomic discovery in anorexia nervosa, with …

Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing

V Akbari, JM Garant, K O'Neill, P Pandoh, R Moore… - Elife, 2022 - elifesciences.org
Imprinting is a critical part of normal embryonic development in mammals, controlled by
defined parent-of-origin (PofO) differentially methylated regions (DMRs) known as imprinting …

Translational perspective on epigenetics in cardiovascular disease

P van der Harst, LJ de Windt, JC Chambers - Journal of the American …, 2017 - jacc.org
A plethora of environmental and behavioral factors interact, resulting in changes in gene
expression and providing a basis for the development and progression of cardiovascular …

[HTML][HTML] Methylome-wide association study provides evidence of particulate matter air pollution-associated DNA methylation

R Gondalia, A Baldassari, KM Holliday… - Environment …, 2019 - Elsevier
Background DNA methylation (DNAm) may contribute to processes that underlie
associations between air pollution and poor health. Therefore, our objective was to evaluate …

[HTML][HTML] Intronic CNVs and gene expression variation in human populations

M Rigau, D Juan, A Valencia, D Rico - PLoS Genetics, 2019 - journals.plos.org
Introns can be extraordinarily large and they account for the majority of the DNA sequence in
human genes. However, little is known about their population patterns of structural variation …

[HTML][HTML] Multi-omics approaches to study platelet mechanisms

FA Solari, D Krahn, F Swieringa, S Verhelst… - Current Opinion in …, 2023 - Elsevier
Platelets are small anucleate cell fragments (2–4 μm in diameter) in the blood, which play an
essential role in thrombosis and hemostasis. Genetic or acquired platelet dysfunctions are …