[HTML][HTML] Spatial analysis of recurrent glioblastoma reveals perivascular niche organization

U Onubogu, CD Gatenbee, S Prabhakaran, KL Wolfe… - JCI insight, 2024 - insight.jci.org
JCI Insight - Spatial analysis of recurrent glioblastoma reveals perivascular niche
organization Go to The Journal of Clinical Investigation About Editors Consulting Editors For …

[HTML][HTML] A perspective on FAIR quality control in multiplexed imaging data processing

WMAM Vierdag, SK Saka - Frontiers in Bioinformatics, 2024 - frontiersin.org
Multiplexed imaging approaches are getting increasingly adopted for imaging of large tissue
areas, yielding big imaging datasets both in terms of the number of samples and the size of …

[HTML][HTML] Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis

W Wang, S Zheng, SC Shin, GC Yuan - bioRxiv, 2024 - ncbi.nlm.nih.gov
Recent technological developments have made it possible to map the spatial organization of
a tissue at the single-cell resolution. However, computational methods for analyzing spatially …

Points2Regions: Fast, interactive clustering of imaging‐based spatial transcriptomics data

A Andersson, A Behanova, C Avenel… - Cytometry Part …, 2024 - Wiley Online Library
Imaging‐based spatial transcriptomics techniques generate data in the form of spatial points
belonging to different mRNA classes. A crucial part of analyzing the data involves the …

Rapid and memory-efficient analysis and quality control of large spatial transcriptomics datasets

B Kover, A Vigilante - bioRxiv, 2024 - biorxiv.org
The 10x Visium spatial transcriptomics platform has been widely adopted due to its
established analysis pipelines, robust community support, and manageable data output …