ParticleChromo3D+: a web server for ParticleChromo3D algorithm for 3D chromosome structure reconstruction

D Vadnais, O Oluwadare - Current Issues in Molecular Biology, 2023 - mdpi.com
Understanding the three-dimensional (3D) structure of chromatin is invaluable for
researching how it functions. One way to gather this information is the chromosome …

ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data

D Vadnais, M Middleton, O Oluwadare - BioData Mining, 2022 - Springer
Background The three-dimensional (3D) structure of chromatin has a massive effect on its
function. Because of this, it is desirable to have an understanding of the 3D structural …

[PDF][PDF] Elements of Chaos Theory in Particle Swarm Optimization and Its Time Reversal

A Bhattacharya - 2023 - researchgate.net
The stability and convergence of PSO is a well-proven result from the perspective of
dynamical systems. We have further analysed PSO from the perspective of chaos theory and …

ParticleChromo3D: A Particle Swarm Optimization Algorithm for Chromosome and Genome 3D Structure Prediction from Hi-C Data

D Vadnais, M Middleton, O Oluwadare - bioRxiv, 2021 - biorxiv.org
Abstract The three-dimensional (3D) structure of chromatin has a massive effect on its
function. Because of this, it is desirable to have an understanding of the 3D structural …

[引用][C] Analysis of PSO by Chaos Theory and a Novel Ensemble Optimization Algorithm: Reverse-Informed Locally-Searched PSO

A Bhattacharya - 2021 - BIRLA INSTITUTE OF …

[引用][C] ANALYSIS OF PSO FROM CHAOS THEORY AND ITS TIME-REVERSAL

A Bhattacharya, N Nagaraj, S Saha

[引用][C] CHAOS IN PSO, ITS TIME-REVERSAL AND MOMENTUM-DRIVEN MULTI-OBJECTIVE OPTIMIZATION

A Bhattacharya, N Nagaraj, S Saha

[引用][C] ANALYSIS OF PSO BY CHAOS THEORY AND ANovel ENSEMBLE OPTIMIZATION TECHNIQUE: REVERSE-INFORMED LOCALLY-SEARCHED PSO

A Bhattacharya, N Nagaraj, S Saha