MFR-DTA: a multi-functional and robust model for predicting drug–target binding affinity and region

Y Hua, X Song, Z Feng, X Wu - Bioinformatics, 2023 - academic.oup.com
Motivation Recently, deep learning has become the mainstream methodology for drug–
target binding affinity prediction. However, two deficiencies of the existing methods restrict …

GPCNDTA: prediction of drug-target binding affinity through cross-attention networks augmented with graph features and pharmacophores

L Zhang, CC Wang, Y Zhang, X Chen - Computers in Biology and Medicine, 2023 - Elsevier
Drug-target affinity prediction is a challenging task in drug discovery. The latest
computational models have limitations in mining edge information in molecule graphs …

MCANet: shared-weight-based MultiheadCrossAttention network for drug–target interaction prediction

J Bian, X Zhang, X Zhang, D Xu… - Briefings in …, 2023 - academic.oup.com
Accurate and effective drug–target interaction (DTI) prediction can greatly shorten the drug
development lifecycle and reduce the cost of drug development. In the deep-learning-based …

DGDTA: dynamic graph attention network for predicting drug–target binding affinity

H Zhai, H Hou, J Luo, X Liu, Z Wu, J Wang - BMC bioinformatics, 2023 - Springer
Background Obtaining accurate drug–target binding affinity (DTA) information is significant
for drug discovery and drug repositioning. Although some methods have been proposed for …

GraphCL-DTA: a graph contrastive learning with molecular semantics for drug-target binding affinity prediction

X Yang, G Yang, J Chu - IEEE Journal of Biomedical and …, 2024 - ieeexplore.ieee.org
Drug-target binding affinity prediction plays an important role in the early stages of drug
discovery, which can infer the strength of interactions between new drugs and new targets …

ETDock: A Novel Equivariant Transformer for Protein-Ligand Docking

Y Yi, X Wan, Y Bian, L Ou-Yang, P Zhao - arXiv preprint arXiv:2310.08061, 2023 - arxiv.org
Predicting the docking between proteins and ligands is a crucial and challenging task for
drug discovery. However, traditional docking methods mainly rely on scoring functions, and …

Prediction of drug-target binding affinity based on multi-scale feature fusion

H Yu, WX Xu, T Tan, Z Liu, JY Shi - Computers in Biology and Medicine, 2024 - Elsevier
Accurate prediction of drug-target binding affinity (DTA) plays a pivotal role in drug discovery
and repositioning. Although deep learning methods are widely used in DTA prediction, two …

Hierarchical multimodal self-attention-based graph neural network for DTI prediction

J Bian, H Lu, G Dong, G Wang - Briefings in Bioinformatics, 2024 - academic.oup.com
Drug–target interactions (DTIs) are a key part of drug development process and their
accurate and efficient prediction can significantly boost development efficiency and reduce …

SadNet: a novel multimodal fusion network for protein–ligand binding affinity prediction

Q Hong, G Zhou, Y Qin, J Shen, H Li - Physical Chemistry Chemical …, 2024 - pubs.rsc.org
Protein–ligand binding affinity prediction plays an important role in the field of drug
discovery. Existing deep learning-based approaches have significantly improved the …

HiGraphDTI: Hierarchical Graph Representation Learning for Drug-Target Interaction Prediction

B Liu, S Wu, J Wang, X Deng, A Zhou - arXiv preprint arXiv:2404.10561, 2024 - arxiv.org
The discovery of drug-target interactions (DTIs) plays a crucial role in pharmaceutical
development. The deep learning model achieves more accurate results in DTI prediction …