[HTML][HTML] Computational approaches for network-based integrative multi-omics analysis

FE Agamah, JR Bayjanov, A Niehues… - Frontiers in Molecular …, 2022 - frontiersin.org
Advances in omics technologies allow for holistic studies into biological systems. These
studies rely on integrative data analysis techniques to obtain a comprehensive view of the …

[HTML][HTML] Neutrophils and COVID-19: active participants and rational therapeutic targets

J Hazeldine, JM Lord - Frontiers in immunology, 2021 - frontiersin.org
Whilst the majority of individuals infected with severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2), the causative pathogen of COVID-19, experience mild to …

[HTML][HTML] Differential co-expression network analysis reveals key hub-high traffic genes as potential therapeutic targets for COVID-19 pandemic

A Hasankhani, A Bahrami, N Sheybani, B Aria… - Frontiers in …, 2021 - frontiersin.org
Background The recent emergence of COVID-19, rapid worldwide spread, and incomplete
knowledge of molecular mechanisms underlying SARS-CoV-2 infection have limited …

[HTML][HTML] Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2–induced systemic toxicity

S Li, F Ma, T Yokota, G Garcia Jr, A Palermo, Y Wang… - JCI insight, 2021 - ncbi.nlm.nih.gov
Extrapulmonary manifestations of COVID-19 are associated with a much higher mortality
rate than pulmonary manifestations. However, little is known about the pathogenesis of …

[HTML][HTML] Immunofibrotic drivers of impaired lung function in postacute sequelae of SARS-CoV-2 infection

HJ Chun, E Coutavas, AB Pine, AI Lee, LY Vanessa… - JCI insight, 2021 - ncbi.nlm.nih.gov
BACKGROUND Individuals recovering from COVID-19 frequently experience persistent
respiratory ailments, which are key elements of postacute sequelae of SARS-CoV-2 …

Rapid multi-omics sample preparation for mass spectrometry

LK Muehlbauer, A Jen, Y Zhu, Y He… - Analytical …, 2023 - ACS Publications
Multi-omics analysis is a powerful and increasingly utilized approach to gain insight into
complex biological systems. One major hindrance with multi-omics, however, is the lengthy …

Classical and alternative receptors for SARS‐CoV‐2 therapeutic strategy

SF Masre, NF Jufri, FW Ibrahim… - Reviews in medical …, 2021 - Wiley Online Library
Understanding the molecules that are essential for severe acute respiratory syndrome
coronavirus‐2 (SARS‐CoV‐2) entry can provide insights into viral infection and …

[HTML][HTML] A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets

Y Zhou, Y Liu, S Gupta, MI Paramo, Y Hou, C Mao… - Nature …, 2023 - nature.com
Studying viral–host protein–protein interactions can facilitate the discovery of therapies for
viral infection. We use high-throughput yeast two-hybrid experiments and mass spectrometry …

Longitudinal plasma proteomics analysis reveals novel candidate biomarkers in acute COVID-19

Y Mohammed, DR Goodlett, MP Cheng… - Journal of proteome …, 2022 - ACS Publications
The host response to COVID-19 pathophysiology over the first few days of infection remains
largely unclear, especially the mechanisms in the blood compartment. We report on a …

[HTML][HTML] Development and validation of a prognostic COVID-19 severity assessment (COSA) score and machine learning models for patient triage at a tertiary hospital

V Schöning, E Liakoni, C Baumgartner… - Journal of translational …, 2021 - Springer
Background Clinical risk scores and machine learning models based on routine laboratory
values could assist in automated early identification of severe acute respiratory syndrome …