[HTML][HTML] Metazoan micrornas

DP Bartel - Cell, 2018 - cell.com
MicroRNAs (miRNAs) are∼ 22 nt RNAs that direct posttranscriptional repression of mRNA
targets in diverse eukaryotic lineages. In humans and other mammals, these small RNAs …

MicroRNAs: from mechanism to organism

PJ Dexheimer, L Cochella - Frontiers in cell and developmental …, 2020 - frontiersin.org
MicroRNAs (miRNAs) are short, regulatory RNAs that act as post-transcriptional repressors
of gene expression in diverse biological contexts. The emergence of small RNA-mediated …

Prediction of on-target and off-target activity of CRISPR–Cas13d guide RNAs using deep learning

HH Wessels, A Stirn, A Méndez-Mancilla, EJ Kim… - Nature …, 2024 - nature.com
Transcriptome engineering applications in living cells with RNA-targeting CRISPR effectors
depend on accurate prediction of on-target activity and off-target avoidance. Here we design …

Massively parallel Cas13 screens reveal principles for guide RNA design

HH Wessels, A Méndez-Mancilla, X Guo, M Legut… - Nature …, 2020 - nature.com
Type VI CRISPR enzymes are RNA-targeting proteins with nuclease activity that enable
specific and robust target gene knockdown without altering the genome. To define rules for …

The genetic and biochemical determinants of mRNA degradation rates in mammals

V Agarwal, DR Kelley - Genome biology, 2022 - Springer
Background Degradation rate is a fundamental aspect of mRNA metabolism, and the factors
governing it remain poorly characterized. Understanding the genetic and biochemical …

[HTML][HTML] Endogenous transcripts direct microRNA degradation in Drosophila, and this targeted degradation is required for proper embryonic development

ER Kingston, LW Blodgett, DP Bartel - Molecular cell, 2022 - cell.com
MicroRNAs (miRNAs) typically direct degradation of their mRNA targets. However, some
targets have unusual miRNA-binding sites that direct degradation of cognate miRNAs …

Diverse cell-specific patterns of alternative polyadenylation in Drosophila

S Lee, YC Chen, FCA Consortium, AE Gillen… - Nature …, 2022 - nature.com
Most genes in higher eukaryotes express isoforms with distinct 3'untranslated regions
(3'UTRs), generated by alternative polyadenylation (APA). Since 3'UTRs are predominant …

The landscape of alternative polyadenylation in single cells of the developing mouse embryo

V Agarwal, S Lopez-Darwin, DR Kelley… - Nature …, 2021 - nature.com
Abstract 3′ untranslated regions (3′ UTRs) post-transcriptionally regulate mRNA stability,
localization, and translation rate. While 3′-UTR isoforms have been globally quantified in …

[HTML][HTML] Sites of transcription initiation drive mRNA isoform selection

C Alfonso-Gonzalez, I Legnini, S Holec, L Arrigoni… - Cell, 2023 - cell.com
The generation of distinct messenger RNA isoforms through alternative RNA processing
modulates the expression and function of genes, often in a cell-type-specific manner. Here …

tRF-Val-CAC-016 modulates the transduction of CACNA1d-mediated MAPK signaling pathways to suppress the proliferation of gastric carcinoma

W Xu, J Zheng, X Wang, B Zhou, H Chen, G Li… - Cell Communication and …, 2022 - Springer
Background As a new kind of non-coding RNAs (ncRNAs), tRNA derivatives play an
important role in gastric carcinoma (GC). Nevertheless, the underlying mechanism tRNA …