[HTML][HTML] The genetics of obesity: from discovery to biology

RJF Loos, GSH Yeo - Nature Reviews Genetics, 2022 - nature.com
The prevalence of obesity has tripled over the past four decades, imposing an enormous
burden on people's health. Polygenic (or common) obesity and rare, severe, early-onset …

Identification of non-coding silencer elements and their regulation of gene expression

B Pang, JH van Weerd, FL Hamoen… - … Reviews Molecular Cell …, 2023 - nature.com
Cell type-and differentiation-specific gene expression is precisely controlled by genomic non-
coding regulatory elements (NCREs), which include promoters, enhancers, silencers and …

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

G Eraslan, E Drokhlyansky, S Anand, E Fiskin… - Science, 2022 - science.org
Understanding gene function and regulation in homeostasis and disease requires
knowledge of the cellular and tissue contexts in which genes are expressed. Here, we …

DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits

M Oliva, K Demanelis, Y Lu, M Chernoff, F Jasmine… - Nature …, 2023 - nature.com
Studies of DNA methylation (DNAm) in solid human tissues are relatively scarce; tissue-
specific characterization of DNAm is needed to understand its role in gene regulation and its …

[HTML][HTML] Genome evolution and the emergence of pathogenicity in avian Escherichia coli

L Mageiros, G Méric, SC Bayliss, J Pensar… - Nature …, 2021 - nature.com
Chickens are the most common birds on Earth and colibacillosis is among the most common
diseases affecting them. This major threat to animal welfare and safe sustainable food …

[HTML][HTML] 15 years of genome-wide association studies and no signs of slowing down

RJF Loos - Nature Communications, 2020 - nature.com
Over the past 15 years, genome-wide association studies (GWASs) have generated a
wealth of new information. Larger samples sizes, refined phenotypes and higher-resolution …

[HTML][HTML] Single-cell network biology for resolving cellular heterogeneity in human diseases

J Cha, I Lee - Experimental & molecular medicine, 2020 - nature.com
Understanding cellular heterogeneity is the holy grail of biology and medicine. Cells
harboring identical genomes show a wide variety of behaviors in multicellular organisms …

[HTML][HTML] Artemisinin resistance in the malaria parasite, Plasmodium falciparum, originates from its initial transcriptional response

L Zhu, RW van der Pluijm, M Kucharski… - Communications …, 2022 - nature.com
The emergence and spread of artemisinin-resistant Plasmodium falciparum, first in the
Greater Mekong Subregion (GMS), and now in East Africa, is a major threat to global malaria …

“Stripe” transcription factors provide accessibility to co-binding partners in mammalian genomes

Y Zhao, SV Vartak, A Conte, X Wang, DA Garcia… - Molecular cell, 2022 - cell.com
Regulatory elements activate promoters by recruiting transcription factors (TFs) to specific
motifs. Notably, TF-DNA interactions often depend on cooperativity with colocalized …

VannoPortal: multiscale functional annotation of human genetic variants for interrogating molecular mechanism of traits and diseases

D Huang, Y Zhou, X Yi, X Fan, J Wang… - Nucleic acids …, 2022 - academic.oup.com
Interpreting the molecular mechanism of genomic variations and their causal relationship
with diseases/traits are important and challenging problems in the human genetic study. To …