Intraoperative margin assessment for basal cell carcinoma with deep learning and histologic tumor mapping to surgical site

JJ Levy, MJ Davis, RS Chacko, MJ Davis, LJ Fu… - NPJ Precision …, 2024 - nature.com
Successful treatment of solid cancers relies on complete surgical excision of the tumor either
for definitive treatment or before adjuvant therapy. Intraoperative and postoperative radial …

Blueprints from plane to space: outlook of next‐generation three‐dimensional histopathology

AL Yoshikawa, T Omura… - Cancer …, 2024 - Wiley Online Library
Here, we summarize the literature relevant to recent advances in three‐dimensional (3D)
histopathology in relation to clinical oncology, highlighting serial sectioning, tissue clearing …

[HTML][HTML] RegWSI: Whole slide image registration using combined deep feature-and intensity-based methods: Winner of the ACROBAT 2023 challenge

M Wodzinski, N Marini, M Atzori, H Müller - Computer Methods and …, 2024 - Elsevier
Background and objective The automatic registration of differently stained whole slide
images (WSIs) is crucial for improving diagnosis and prognosis by fusing complementary …

[HTML][HTML] Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem

JG Chen, JC Chávez-Fuentes, M O'Brien, J Xu, E Ruiz… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Emerging spatial omics technologies continue to advance the molecular mapping of tissue
architecture and the investigation of gene regulation and cellular crosstalk, which in turn …

Cross-species variability in lobular geometry and cytochrome P450 hepatic zonation: insights into CYP1A2, CYP2D6, CYP2E1 and CYP3A4

M Albadry, J Küttner, J Grzegorzewski… - Frontiers in …, 2024 - frontiersin.org
There is a lack of systematic research exploring cross-species variation in liver lobular
geometry and zonation patterns of critical drug-metabolizing enzymes, a knowledge gap …

SuperCUT, an unsupervised multimodal image registration with deep learning for biomedical microscopy

I Grexa, ZZ Iván, E Migh, F Kovács… - Briefings in …, 2024 - academic.oup.com
Numerous imaging techniques are available for observing and interrogating biological
samples, and several of them can be used consecutively to enable correlative analysis of …

Validation of an Organ Mapping Antibody Panel for Cyclical Immunofluorescence Microscopy on Normal Human Kidneys

M Brewer, LG Migas, KA Clouthier… - American Journal …, 2024 - journals.physiology.org
The lack of standardization in antibody validation remains a major contributor to
irreproducibility of human research. To address this, we have applied a standardized …

DeeperHistReg: Robust Whole Slide Images Registration Framework

M Wodzinski, N Marini, M Atzori, H Müller - arXiv preprint arXiv …, 2024 - arxiv.org
DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs)
acquired using multiple stains. It allows one to perform the preprocessing, initial alignment …

From Pixel to Slide image: Polarization Modality-based Pathological Diagnosis Using Representation Learning

J Dong, Y Yao, Y Dong, H Ma - arXiv preprint arXiv:2401.01496, 2024 - arxiv.org
Thyroid cancer is the most common endocrine malignancy, and accurately distinguishing
between benign and malignant thyroid tumors is crucial for developing effective treatment …

Nuclei-Location Based Point Set Registration of Multi-Stained Whole Slide Images

A Jeyasangar, A Alsalemi, SEA Raza - arXiv preprint arXiv:2404.17041, 2024 - arxiv.org
Whole Slide Images (WSIs) provide exceptional detail for studying tissue architecture at the
cell level. To study tumour microenvironment (TME) with the context of various protein …