[HTML][HTML] Graph neural networks and their current applications in bioinformatics

XM Zhang, L Liang, L Liu, MJ Tang - Frontiers in genetics, 2021 - frontiersin.org
Graph neural networks (GNNs), as a branch of deep learning in non-Euclidean space,
perform particularly well in various tasks that process graph structure data. With the rapid …

[HTML][HTML] Graph-based deep learning for medical diagnosis and analysis: past, present and future

D Ahmedt-Aristizabal, MA Armin, S Denman, C Fookes… - Sensors, 2021 - mdpi.com
With the advances of data-driven machine learning research, a wide variety of prediction
problems have been tackled. It has become critical to explore how machine learning and …

A survey on graph neural networks for time series: Forecasting, classification, imputation, and anomaly detection

M Jin, HY Koh, Q Wen, D Zambon, C Alippi… - arXiv preprint arXiv …, 2023 - arxiv.org
Time series are the primary data type used to record dynamic system measurements and
generated in great volume by both physical sensors and online processes (virtual sensors) …

Spatio-temporal graph convolution for resting-state fMRI analysis

S Gadgil, Q Zhao, A Pfefferbaum, EV Sullivan… - … Image Computing and …, 2020 - Springer
Abstract The Blood-Oxygen-Level-Dependent (BOLD) signal of resting-state fMRI (rs-fMRI)
records the temporal dynamics of intrinsic functional networks in the brain. However, existing …

A survey on graph neural networks and graph transformers in computer vision: a task-oriented perspective

C Chen, Y Wu, Q Dai, HY Zhou, M Xu, S Yang… - arXiv preprint arXiv …, 2022 - arxiv.org
Graph Neural Networks (GNNs) have gained momentum in graph representation learning
and boosted the state of the art in a variety of areas, such as data mining (\emph {eg,} social …

[HTML][HTML] Gut bless you: The microbiota-gut-brain axis in irritable bowel syndrome

EMR Hillestad, A van der Meeren… - World journal of …, 2022 - ncbi.nlm.nih.gov
Irritable bowel syndrome (IBS) is a common clinical label for medically unexplained
gastrointestinal symptoms, recently described as a disturbance of the microbiota-gut-brain …

Self-supervised learning of brain dynamics from broad neuroimaging data

A Thomas, C Ré, R Poldrack - Advances in neural …, 2022 - proceedings.neurips.cc
Self-supervised learning techniques are celebrating immense success in natural language
processing (NLP) by enabling models to learn from broad language data at unprecedented …

Interpreting mental state decoding with deep learning models

AW Thomas, C Ré, RA Poldrack - Trends in Cognitive Sciences, 2022 - cell.com
In mental state decoding, researchers aim to identify the set of mental states (eg,
experiencing happiness or fear) that can be reliably identified from the activity patterns of a …

[HTML][HTML] fmri brain decoding and its applications in brain–computer interface: A survey

B Du, X Cheng, Y Duan, H Ning - Brain Sciences, 2022 - mdpi.com
Brain neural activity decoding is an important branch of neuroscience research and a key
technology for the brain–computer interface (BCI). Researchers initially developed simple …

[HTML][HTML] Decoding task-based fMRI data with graph neural networks, considering individual differences

M Saeidi, W Karwowski, FV Farahani, K Fiok… - Brain Sciences, 2022 - mdpi.com
Task fMRI provides an opportunity to analyze the working mechanisms of the human brain
during specific experimental paradigms. Deep learning models have increasingly been …