De Novo Transcriptome Sequence Assembly from Coconut Leaves and Seeds with a Focus on Factors Involved in RNA-Directed DNA Methylation

YY Huang, CP Lee, JL Fu, BCH Chang… - G3: Genes …, 2014 - academic.oup.com
Coconut palm (Cocos nucifera) is a symbol of the tropics and a source of numerous edible
and nonedible products of economic value. Despite its nutritional and industrial significance …

Regulation of parent-of-origin allelic expression in the endosperm

KS Hornslien, JR Miller, PE Grini - Plant physiology, 2019 - academic.oup.com
Genomic imprinting is an epigenetic phenomenon established in the gametes prior to
fertilization that causes differential expression of parental alleles, mainly in the endosperm of …

Subtle perturbations of the maize methylome reveal genes and transposons silenced by chromomethylase or RNA-directed DNA methylation pathways

SN Anderson, GJ Zynda, J Song, Z Han… - G3: Genes …, 2018 - academic.oup.com
DNA methylation is a chromatin modification that can provide epigenetic regulation of gene
and transposon expression. Plants utilize several pathways to establish and maintain DNA …

Possible roles for polycomb repressive complex 2 in cereal endosperm

K Tonosaki, T Kinoshita - Frontiers in plant science, 2015 - frontiersin.org
The polycomb repressive complex 2 (PRC2) is an evolutionarily conserved multimeric
protein complex in both plants and animals. In contrast to animals, plants have evolved a …

Epigenomic landscape and epigenetic regulation in maize

J Yu, F Xu, Z Wei, X Zhang, T Chen, L Pu - Theoretical and Applied …, 2020 - Springer
Key message Epigenetic regulation has been implicated in the control of multiple agronomic
traits in maize. Here, we review current advances in our understanding of epigenetic …

Seed coat formation: its evolution and regulation

AJ Matilla - Seed Science Research, 2019 - cambridge.org
In higher plants, the seed precursor (ovule primordia) is composed of three parts: funiculus,
nucellus and chalaza, generating the latter one (II) or two (OI and II) protective maternal …

Genomic imprinting, disrupted placental expression, and speciation

TD Brekke, LA Henry, JM Good - Evolution, 2016 - academic.oup.com
The importance of regulatory incompatibilities to the early stages of speciation remains
unclear. Hybrid mammals often show extreme parent-of-origin growth effects that are …

Chromatin dynamics during plant sexual reproduction

W She, C Baroux - Frontiers in plant science, 2014 - frontiersin.org
Plants have the remarkable ability to establish new cell fates throughout their life cycle, in
contrast to most animals that define all cell lineages during embryogenesis. This ability is …

Zygotic genome activation and imprinting: parent-of-origin gene regulation in plant embryogenesis

M García-Aguilar, CS Gillmor - Current opinion in plant biology, 2015 - Elsevier
Highlights•Zygotic genome activation and imprinting regulate allele-dependent gene
expression in embryos.•Zygotic genome activation affects thousands of genes, while …

DNA METHYLTRANSFERASE 1 is involved in mCG and mCCG DNA methylation and is essential for sporophyte development in Physcomitrella patens

R Yaari, C Noy-Malka, G Wiedemann… - Plant molecular …, 2015 - Springer
DNA methylation has a crucial role in plant development regulating gene expression and
silencing of transposable elements. Maintenance DNA methylation in plants occurs at …