Metagenomics for pathogen detection in public health

RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang - Genome medicine, 2013 - Springer
Traditional pathogen detection methods in public health infectious disease surveillance rely
upon the identification of agents that are already known to be associated with a particular …

[HTML][HTML] Viral pathogen discovery

CY Chiu - Current opinion in microbiology, 2013 - Elsevier
Highlights•Pathogen discovery is critically important to infectious diseases and public
health.•Nearly all new outbreaks are caused by the emergence of novel viruses.•Genomic …

The evolutionary history of vertebrate RNA viruses

M Shi, XD Lin, X Chen, JH Tian, LJ Chen, K Li, W Wang… - Nature, 2018 - nature.com
Our understanding of the diversity and evolution of vertebrate RNA viruses is largely limited
to those found in mammalian and avian hosts and associated with overt disease. Here …

Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018

P Maes, SV Alkhovsky, Y Bào, M Beer, M Birkhead… - Archives of …, 2018 - Springer
In 2018, the family Arenaviridae was expanded by inclusion of 1 new genus and 5 novel
species. At the same time, the recently established order Bunyavirales was expanded by 3 …

PRICE: software for the targeted assembly of components of (Meta) genomic sequence data

JG Ruby, P Bellare, JL DeRisi - G3: Genes, Genomes, Genetics, 2013 - academic.oup.com
Low-cost DNA sequencing technologies have expanded the role for direct nucleic acid
sequencing in the analysis of genomes, transcriptomes, and the metagenomes of whole …

Past, present, and future of arenavirus taxonomy

SR Radoshitzky, Y Bào, MJ Buchmeier, RN Charrel… - 2015 - Springer
Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been
known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The …

Emerging virus diseases: can we ever expect the unexpected?

CR Howard, NF Fletcher - Emerging microbes & infections, 2012 - Taylor & Francis
Emerging virus diseases are a major threat to human and veterinary public health. With new
examples occurring approximately one each year, the majority are viruses originating from …

[HTML][HTML] A decade of RNA virus metagenomics is (not) enough

AL Greninger - Virus research, 2018 - Elsevier
It is hard to overemphasize the role that metagenomics has had on our recent understanding
of RNA virus diversity. Metagenomics in the 21st century has brought with it an explosion in …

Comparative mechanistic studies of brilacidin, daptomycin, and the antimicrobial peptide LL16

B Mensa, GL Howell, R Scott… - Antimicrobial agents and …, 2014 - Am Soc Microbiol
Brilacidin (PMX30063) has shown potent bactericidal activity against drug-resistant and-
susceptible strains of multiple Gram-negative and Gram-positive pathogens. In this study, we …

Profile hidden Markov models for the detection of viruses within metagenomic sequence data

P Skewes-Cox, TJ Sharpton, KS Pollard, JL DeRisi - PloS one, 2014 - journals.plos.org
Rapid, sensitive, and specific virus detection is an important component of clinical
diagnostics. Massively parallel sequencing enables new diagnostic opportunities that …