TADeus2: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure

B Poszewiecka, VM Pienkowski… - Nucleic Acids …, 2022 - academic.oup.com
In recent years great progress has been made in identification of structural variants (SV) in
the human genome. However, the interpretation of SVs, especially located in non-coding …

Stressful start causes chromosome errors in human embryos

T Cavazza, M Schuh - 2022 - nature.com
Stressful start causes chromosome errors in human embryos Skip to main content Thank you
for visiting nature.com. You are using a browser version with limited support for CSS. To obtain …

Dissecting the molecular features of bovine-arrested eight-cell embryos using single-cell multi-omics sequencing

J Zhang, Q Lyu, J Li, Z Ma, R Yang, X Yin… - Biology of …, 2023 - academic.oup.com
The regulation of mammalian early-embryonic development is a complex, coordinated
process that involves widespread transcriptomic and epigenetic remodeling. The main …

A tremendous reorganization journey for the 3D chromatin structure from gametes to embryos

Z Chen, X Chen - Genes, 2022 - mdpi.com
The 3D chromatin structure within the nucleus is important for gene expression regulation
and correct developmental programs. Recently, the rapid development of low-input …

Advances in studying human gametogenesis and embryonic development in China

Q Liu, X Chen, J Qiao - Biology of Reproduction, 2022 - academic.oup.com
Reproductive medicine in China has developed rapidly since 1988 due to support from the
government and scientific exploration. However, the success rate of assisted reproduction …

TAMC: A deep-learning approach to predict motif-centric transcriptional factor binding activity based on ATAC-seq profile

T Yang, R Henao - PLoS Computational Biology, 2022 - journals.plos.org
Determining transcriptional factor binding sites (TFBSs) is critical for understanding the
molecular mechanisms regulating gene expression in different biological conditions …

Omne vivum ex ovo: the oocyte reprogramming and remodeling activities

H Fulka, P Loi, M Czernik, A Surani, J Fulka - Reproduction, 2023 - rep.bioscientifica.com
In brief Understanding the establishment of post-fertilization totipotency has broad
implications for modern biotechnologies. This review summarizes the current knowledge of …

2-cell-like cells: an avenue for improving SCNT efficiency

B Fu, H Ma, D Liu - Biomolecules, 2022 - mdpi.com
After fertilization, the zygote genome undergoes dramatic structural reorganization to ensure
the establishment of totipotency, and then the totipotent potential of the zygote or 2-cell …

Epigenomic dynamics of early Xenopus Embryos

JJ Zhou, KWY Cho - Development, growth & differentiation, 2022 - Wiley Online Library
How the embryonic genome regulates accessibility to transcription factors is one of the
major questions in understanding the spatial and temporal dynamics of gene expression …

Causality in transcription and genome folding: insights from X inactivation

M Bauer, B Payer, GJ Filion - Bioessays, 2022 - Wiley Online Library
The spatial organization of genomes is becoming increasingly understood. In mammals,
where it is most investigated, this organization ties in with transcription, so an important …