[HTML][HTML] Mining data and metadata from the gene expression omnibus

Z Wang, A Lachmann, A Ma'ayan - Biophysical reviews, 2019 - Springer
Publicly available gene expression datasets deposited in the Gene Expression Omnibus
(GEO) are growing at an accelerating rate. Such datasets hold great value for knowledge …

[HTML][HTML] Scholarly recommendation systems: a literature survey

Z Zhang, BG Patra, A Yaseen, J Zhu… - … and Information Systems, 2023 - Springer
A scholarly recommendation system is an important tool for identifying prior and related
resources such as literature, datasets, grants, and collaborators. A well-designed scholarly …

[HTML][HTML] Addressing barriers in FAIR data practices for biomedical data

LD Hughes, G Tsueng, J DiGiovanna, TD Horvath… - Scientific Data, 2023 - nature.com
FAIR data sharing is integral to spur research reproducibility, promote data reuse, and
accelerate research. However, the first step in using these data assets–discovering that they …

[HTML][HTML] A data citation roadmap for scholarly data repositories

M Fenner, M Crosas, JS Grethe, D Kennedy… - Scientific data, 2019 - nature.com
This article presents a practical roadmap for scholarly data repositories to implement data
citation in accordance with the Joint Declaration of Data Citation Principles, a synopsis and …

[PDF][PDF] Optimization driven MapReduce framework for indexing and retrieval of big data

HB Abdalla, AM Ahmed, MA Al Sibahee - KSII Transactions on Internet and …, 2020 - itiis.org
With the technical advances, the amount of big data is increasing day-by-day such that the
traditional software tools face a burden in handling them. Additionally, the presence of the …

ExoBCD: a comprehensive database for exosomal biomarker discovery in breast cancer

X Wang, Z Chai, G Pan, Y Hao, B Li, T Ye… - Briefings in …, 2021 - academic.oup.com
Effective and safe implementation of precision oncology for breast cancer is a vital strategy
to improve patient outcomes, which relies on the application of reliable biomarkers. As 'liquid …

[HTML][HTML] A repository for the publication and sharing of heterogeneous materials data

H Gong, J He, X Zhang, L Duan, Z Tian, W Zhao… - Scientific Data, 2022 - nature.com
Abstract National Materials Data Management and Service platform (NMDMS) is a materials
data repository for the publication and sharing of heterogeneous materials scientific data …

[HTML][HTML] A content-based literature recommendation system for datasets to improve data reusability–A case study on Gene Expression Omnibus (GEO) datasets

BG Patra, V Maroufy, B Soltanalizadeh, N Deng… - Journal of Biomedical …, 2020 - Elsevier
Objective The centrality of data to biomedical research is difficult to understate, and the
same is true for the importance of the biomedical literature in disseminating empirical …

[HTML][HTML] Developing a standardized but extendable framework to increase the findability of infectious disease datasets

G Tsueng, MAA Cano, J Bento, C Czech, M Kang… - Scientific Data, 2023 - nature.com
Biomedical datasets are increasing in size, stored in many repositories, and face challenges
in FAIRness (findability, accessibility, interoperability, reusability). As a Consortium of …

A content-based dataset recommendation system for researchers—a case study on Gene Expression Omnibus (GEO) repository

BG Patra, K Roberts, H Wu - Database, 2020 - academic.oup.com
It is a growing trend among researchers to make their data publicly available for
experimental reproducibility and data reusability. Sharing data with fellow researchers helps …