[HTML][HTML] Artificial intelligence in multi-objective drug design

S Luukkonen, HW van den Maagdenberg… - Current Opinion in …, 2023 - Elsevier
The factors determining a drug's success are manifold, making de novo drug design an
inherently multi-objective optimisation (MOO) problem. With the advent of machine learning …

[HTML][HTML] Computer-aided multi-objective optimization in small molecule discovery

JC Fromer, CW Coley - Patterns, 2023 - cell.com
Molecular discovery is a multi-objective optimization problem that requires identifying a
molecule or set of molecules that balance multiple, often competing, properties. Multi …

Deep Generative Models in De Novo Drug Molecule Generation

C Pang, J Qiao, X Zeng, Q Zou… - Journal of Chemical …, 2023 - ACS Publications
The discovery of new drugs has important implications for human health. Traditional
methods for drug discovery rely on experiments to optimize the structure of lead molecules …

[HTML][HTML] Multi-and many-objective optimization: present and future in de novo drug design

JS Angelo, IA Guedes, HJC Barbosa… - Frontiers in …, 2023 - frontiersin.org
de novo Drug Design (dnDD) aims to create new molecules that satisfy multiple conflicting
objectives. Since several desired properties can be considered in the optimization process …

Exploring activity landscapes with extended similarity: is Tanimoto enough?

TB Dunn, E López‐López, TD Kim… - Molecular …, 2023 - Wiley Online Library
Understanding structure‐activity landscapes is essential in drug discovery. Similarly, it has
been shown that the presence of activity cliffs in compound data sets can have a substantial …

Directional multiobjective optimization of metal complexes at the billion-system scale

H Kneiding, A Nova, D Balcells - Nature Computational Science, 2024 - nature.com
The discovery of transition metal complexes (TMCs) with optimal properties requires large
ligand libraries and efficient multiobjective optimization algorithms. Here we provide the …

A Survey on Evolutionary Computation Based Drug Discovery

Q Yu, Q Lin, J Ji, W Zhou, S He, Z Zhu… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Drug discovery is an expensive and risky process. To combat the challenges in drug
discovery, an increasing number of researchers and pharmaceutical companies recognize …

Determining best practices for using genetic algorithms in molecular discovery

BL Greenstein, DC Elsey, GR Hutchison - The Journal of Chemical …, 2023 - pubs.aip.org
Genetic algorithms (GAs) are a powerful tool to search large chemical spaces for inverse
molecular design. However, GAs have multiple hyperparameters that have not been …

[HTML][HTML] iSIM: instant similarity

K López-Pérez, TD Kim, RA Miranda-Quintana - Digital Discovery, 2024 - pubs.rsc.org
The quantification of molecular similarity has been present since the beginning of
cheminformatics. Although several similarity indices and molecular representations have …

Modeling and validation of multi-objective optimization for mixed xylene hybrid distillation/crystallization process

W Chen, T Yao, J Liu, M Li, S Jia, Z Gao… - Separation and Purification …, 2024 - Elsevier
Innovative hybrid distillation/crystallization processes offer significant energy saving and
cost reduction for the separation of isomer mixtures. Despite of the enormous potential of …