Graph signal processing, graph neural network and graph learning on biological data: a systematic review

R Li, X Yuan, M Radfar, P Marendy, W Ni… - IEEE Reviews in …, 2021 - ieeexplore.ieee.org
Graph networks can model data observed across different levels of biological systems that
span from population graphs (with patients as network nodes) to molecular graphs that …

Data-driven graph construction and graph learning: A review

L Qiao, L Zhang, S Chen, D Shen - Neurocomputing, 2018 - Elsevier
A graph is one of important mathematical tools to describe ubiquitous relations. In the
classical graph theory and some applications, graphs are generally provided in advance, or …

[HTML][HTML] Hybrid high-order functional connectivity networks using resting-state functional MRI for mild cognitive impairment diagnosis

Y Zhang, H Zhang, X Chen, SW Lee, D Shen - Scientific reports, 2017 - nature.com
Conventional functional connectivity (FC), referred to as low-order FC, estimates temporal
correlation of the resting-state functional magnetic resonance imaging (rs-fMRI) time series …

Multicenter and multichannel pooling GCN for early AD diagnosis based on dual-modality fused brain network

X Song, F Zhou, AF Frangi, J Cao… - … on Medical Imaging, 2022 - ieeexplore.ieee.org
For significant memory concern (SMC) and mild cognitive impairment (MCI), their
classification performance is limited by confounding features, diverse imaging protocols, and …

Graph convolution network with similarity awareness and adaptive calibration for disease-induced deterioration prediction

X Song, F Zhou, AF Frangi, J Cao, X Xiao, Y Lei… - Medical Image …, 2021 - Elsevier
Graph convolution networks (GCN) have been successfully applied in disease prediction
tasks as they capture interactions (ie, edges and edge weights on the graph) between …

Extraction of dynamic functional connectivity from brain grey matter and white matter for MCI classification

X Chen, H Zhang, L Zhang, C Shen… - Human brain …, 2017 - Wiley Online Library
Brain functional connectivity (FC) extracted from resting‐state fMRI (RS‐fMRI) has become a
popular approach for diagnosing various neurodegenerative diseases, including …

Autism spectrum disorder diagnosis using graph attention network based on spatial-constrained sparse functional brain networks

C Yang, P Wang, J Tan, Q Liu, X Li - Computers in biology and medicine, 2021 - Elsevier
The accurate diagnosis of autism spectrum disorder (ASD), a common mental disease in
children, has always been an important task in clinical practice. In recent years, the use of …

[HTML][HTML] Multiple measurement analysis of resting-state fMRI for ADHD classification in adolescent brain from the ABCD study

Z Wang, X Zhou, Y Gui, M Liu, H Lu - Translational Psychiatry, 2023 - nature.com
Attention deficit hyperactivity disorder (ADHD) is one of the most common psychiatric
disorders in school-aged children. Its accurate diagnosis looks after patients' interests well …

Principles and open questions in functional brain network reconstruction

O Korhonen, M Zanin, D Papo - Human Brain Mapping, 2021 - Wiley Online Library
Graph theory is now becoming a standard tool in system‐level neuroscience. However,
endowing observed brain anatomy and dynamics with a complex network representation …

Self-calibrated brain network estimation and joint non-convex multi-task learning for identification of early Alzheimer's disease

B Lei, N Cheng, AF Frangi, EL Tan, J Cao, P Yang… - Medical image …, 2020 - Elsevier
Detection of early stages of Alzheimer's disease (AD)(ie, mild cognitive impairment (MCI)) is
important to maximize the chances to delay or prevent progression to AD. Brain connectivity …