Structure, assembly, and function of tripartite efflux and type 1 secretion systems in gram-negative bacteria

I Alav, J Kobylka, MS Kuth, KM Pos, M Picard… - Chemical …, 2021 - ACS Publications
Tripartite efflux pumps and the related type 1 secretion systems (T1SSs) in Gram-negative
organisms are diverse in function, energization, and structural organization. They form …

Probiotics, gut microbiota, and their influence on host health and disease

B Sánchez, S Delgado… - Molecular nutrition & …, 2017 - Wiley Online Library
The gastrointestinal tract of mammals hosts a high and diverse number of different
microorganisms, known as intestinal microbiota. Many probiotics were originally isolated …

Autism-related dietary preferences mediate autism-gut microbiome associations

CX Yap, AK Henders, GA Alvares, DLA Wood… - Cell, 2021 - cell.com
There is increasing interest in the potential contribution of the gut microbiome to autism
spectrum disorder (ASD). However, previous studies have been underpowered and have …

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

H Mi, D Ebert, A Muruganujan, C Mills… - Nucleic acids …, 2021 - academic.oup.com
Abstract PANTHER (Protein Analysis Through Evolutionary Relationships, http://www.
pantherdb. org) is a resource for the evolutionary and functional classification of protein …

RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

W Li, KR O'Neill, DH Haft, M DiCuccio… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Reference Sequence (RefSeq) project at the National Center for Biotechnology
Information (NCBI) contains nearly 200 000 bacterial and archaeal genomes and 150 …

Updating species diversity of Colletotrichum, with a phylogenomic overview

F Liu, ZY Ma, LW Hou, YZ Diao, WP Wu… - Studies in …, 2022 - ingentaconnect.com
The genus Colletotrichum includes important plant pathogens, endophytes, saprobes and
human pathogens. Even though the polyphasic approach has facilitatedColletotrichum …

The transporter classification database (TCDB): 2021 update

MH Saier Jr, VS Reddy… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Transporter Classification Database (TCDB; tcdb. org) is a freely accessible
reference resource, which provides functional, structural, mechanistic, medical and …

Bifidobacterium infantis treatment promotes weight gain in Bangladeshi infants with severe acute malnutrition

MJ Barratt, S Nuzhat, K Ahsan, SA Frese… - Science Translational …, 2022 - science.org
Disrupted development of the gut microbiota is a contributing cause of childhood
malnutrition. Bifidobacterium longum subspecies infantis is a prominent early colonizer of …

The ChEMBL database in 2017

A Gaulton, A Hersey, M Nowotka, AP Bento… - Nucleic acids …, 2017 - academic.oup.com
ChEMBL is an open large-scale bioactivity database (https://www. ebi. ac. uk/chembl),
previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since …

The Chara genome: secondary complexity and implications for plant terrestrialization

T Nishiyama, H Sakayama, J De Vries, H Buschmann… - Cell, 2018 - cell.com
Land plants evolved from charophytic algae, among which Charophyceae possess the most
complex body plans. We present the genome of Chara braunii; comparison of the genome to …