From industrial by‐products to value‐added compounds: the design of efficient microbial cell factories by coupling systems metabolic engineering and bioprocesses

AET Rangel, JM Gómez Ramírez… - Biofuels, Bioproducts …, 2020 - Wiley Online Library
Microbial cell factories have been used for the production of valuable chemical compounds
using a classical metabolic engineering approach, but this requires much time and cost, and …

Machine learning for the advancement of genome-scale metabolic modeling

P Kundu, S Beura, S Mondal, AK Das, A Ghosh - Biotechnology Advances, 2024 - Elsevier
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the
interrelations between genotype, phenotype, and external environment. The recent …

Artificial intelligence system for enhanced automated 1, 3-propanediol green biosynthesis

J Huang, CD Li, H Zhao, M Yu, A Zhang, B Fang - Green Chemistry, 2023 - pubs.rsc.org
The biorefinery concept holds the promise of green industrial production of biofuel or
chemicals, in which fossil resources are substituted by renewable biomass, securing …

Effect of CO2, aeration, irradiance, and photoperiod on biomass and lipid accumulation in a microalga autotrophically cultured and selected from four Colombian …

LM Serrano-Bermúdez, LC Montenegro-Ruíz… - Bioresource Technology …, 2020 - Elsevier
This study evaluated the ability to accumulate biomass and lipids during the autotrophic
culture of four Colombian-native microalgae strains (Scenedesmus ovalternus …

[HTML][HTML] Tuning of fed-batch cultivation of Streptomyces clavuligerus for enhanced Clavulanic Acid production based on genome-scale dynamic modeling

D Gómez-Ríos, H Ramírez-Malule, P Neubauer… - Biochemical …, 2022 - Elsevier
Streptomyces clavuligerus (S. clavuligerus) is a filamentous Gram-positive bacterial
producer of the β-lactamase inhibitor clavulanic acid (CA). Antibiotics biosynthesis and …

Dynamic flux balance analysis of 1,3‐propanediol production by clostridium butyricum fermentation

DT Pan, P Wang, XL Wang, YQ Sun… - Biotechnology …, 2024 - Wiley Online Library
To study the relationship between the yield of 1, 3‐propanediol (1, 3‐PDO) and the flux
change of the Clostridium butyricum metabolic pathway, an optimized calculation method …

A Holistic Approach from Systems Biology Reveals the Direct Influence of the Quorum-Sensing Phenomenon on Pseudomonas aeruginosa Metabolism to …

DC Clavijo-Buriticá, C Arévalo-Ferro… - Metabolites, 2023 - mdpi.com
Computational modeling and simulation of biological systems have become valuable tools
for understanding and predicting cellular performance and phenotype generation. This work …

Flux balance analysis of metabolic networks for efficient engineering of microbial cell factories

P Sen - Biotechnology and Genetic Engineering Reviews, 2022 - Taylor & Francis
Metabolic engineering principles have long been applied to explore the metabolic networks
of complex microbial cell factories under a variety of environmental constraints for effective …

Engineering microbial chemical factories using metabolic models

D Sarkar, CD Maranas - BMC Chemical Engineering, 2019 - Springer
Living organisms in analogy with chemical factories use simple molecules such as sugars to
produce a variety of compounds which are necessary for sustaining life and some of which …

Metabolic Shift of Clostridium butyricum by External Electron Supply in Raw Glycerol Electrofermentation

OL Aragón, M Bernal, D Montoya - Chemical Engineering Transactions, 2023 - cetjournal.it
Crude glycerol can serve as a low-cost substrate in biotechnological applications.
Electrofermentation is a bioelectrochemical technology in which it is possible to improve and …