Navigating the pitfalls of mapping DNA and RNA modifications

Y Kong, EA Mead, G Fang - Nature Reviews Genetics, 2023 - nature.com
Chemical modifications to nucleic acids occur across the kingdoms of life and carry
important regulatory information. Reliable high-resolution mapping of these modifications is …

[HTML][HTML] The lncRNA epigenetics: the significance of m6A and m5C lncRNA modifications in cancer

VY Cusenza, A Tameni, A Neri, R Frazzi - Frontiers in oncology, 2023 - frontiersin.org
Most of our transcribed RNAs are represented by non-coding sequences. Long non-coding
RNAs (lncRNAs) are transcripts with no or very limited protein coding ability and a length> …

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology

Y Zhang, J Jiang, J Ma, Z Wei, Y Wang… - Nucleic Acids …, 2023 - academic.oup.com
With advanced technologies to map RNA modifications, our understanding of them has
been revolutionized, and they are seen to be far more widespread and important than …

RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications

X Bao, Y Zhang, H Li, Y Teng, L Ma… - Nucleic Acids …, 2023 - academic.oup.com
RNA modification is a dynamic and reversible process regulated by a series of writers,
erasers and readers (WERs). Abnormal changes of WERs will disrupt the RNA modification …

m6A-Atlas v2.0: updated resources for unraveling the N6-methyladenosine (m6A) epitranscriptome among multiple species

Z Liang, H Ye, J Ma, Z Wei, Y Wang… - Nucleic Acids …, 2024 - academic.oup.com
Abstract N 6-Methyladenosine (m6A) is one of the most abundant internal chemical
modifications on eukaryote mRNA and is involved in numerous essential molecular …

[HTML][HTML] Deepm5C: a deep-learning-based hybrid framework for identifying human RNA N5-methylcytosine sites using a stacking strategy

MM Hasan, S Tsukiyama, JY Cho, H Kurata, MA Alam… - Molecular Therapy, 2022 - cell.com
As one of the most prevalent post-transcriptional epigenetic modifications, N5-
methylcytosine (m5C) plays an essential role in various cellular processes and disease …

[HTML][HTML] NSUN2 promotes osteosarcoma progression by enhancing the stability of FABP5 mRNA via m5C methylation

M Yang, R Wei, S Zhang, S Hu, X Liang, Z Yang… - Cell death & …, 2023 - nature.com
methylcytosine (m5C) modification, which is mainly induced by the RNA methyltransferase
NSUN2 (NOP2/Sun domain family, member 2), is an important chemical posttranscriptional …

RMDisease V2. 0: an updated database of genetic variants that affect RNA modifications with disease and trait implication

B Song, X Wang, Z Liang, J Ma, D Huang… - Nucleic Acids …, 2023 - academic.oup.com
Recent advances in epitranscriptomics have unveiled functional associations between RNA
modifications (RMs) and multiple human diseases, but distinguishing the functional or …

[HTML][HTML] Novel insight into RNA modifications in tumor immunity: Promising targets to prevent tumor immune escape

Y Kong, J Yu, S Ge, X Fan - The Innovation, 2023 - cell.com
An immunosuppressive state is a typical feature of the tumor microenvironment. Despite the
dramatic success of immune checkpoint inhibitor (ICI) therapy in preventing tumor cell …

[HTML][HTML] Epitranscriptome: review of top 25 most-studied RNA modifications

VA Arzumanian, GV Dolgalev, IY Kurbatov… - International Journal of …, 2022 - mdpi.com
The alphabet of building blocks for RNA molecules is much larger than the standard four
nucleotides. The diversity is achieved by the post-transcriptional biochemical modification of …