[HTML][HTML] Protein degradation on the global scale

EV Rusilowicz-Jones, S Urbé, MJ Clague - Molecular Cell, 2022 - cell.com
Protein degradation occurs through proteasomal, endosomal, and lysosomal pathways.
Technological advancements have allowed for the determination of protein copy numbers …

[HTML][HTML] Proteomic approaches advancing targeted protein degradation

G Sathe, GP Sapkota - Trends in pharmacological sciences, 2023 - cell.com
Targeted protein degradation (TPD) is an emerging modality for research and therapeutics.
Most TPD approaches harness cellular ubiquitin-dependent proteolytic pathways …

A proteome-wide atlas of drug mechanism of action

DC Mitchell, M Kuljanin, J Li, JG Van Vranken… - Nature …, 2023 - nature.com
Defining the cellular response to pharmacological agents is critical for understanding the
mechanism of action of small molecule perturbagens. Here, we developed a 96-well-plate …

Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores

F Huang, M Fu, JR Li, L Chen, KY Feng… - … et Biophysica Acta (BBA …, 2023 - Elsevier
Metabolic stability of proteins plays a vital role in various dedicated cellular processes.
Traditional methods of measuring the metabolic stability are time-consuming and expensive …

[HTML][HTML] The transition from HIF-1 to HIF-2 during prolonged hypoxia results from reactivation of PHDs and HIF1A mRNA instability

M Jaśkiewicz, A Moszyńska, J Króliczewski… - Cellular & molecular …, 2022 - Springer
The hypoxia-inducible factors (HIF) are transcription factors that activate the adaptive
hypoxic response when oxygen levels are low. The HIF transcriptional program increases …

[HTML][HTML] Diverse partial reprogramming strategies restore youthful gene expression and transiently suppress cell identity

AE Roux, C Zhang, J Paw, J Zavala-Solorio… - Cell Systems, 2022 - cell.com
Partial pluripotent reprogramming can reverse features of aging in mammalian cells, but the
impact on somatic identity and the necessity of individual reprogramming factors remain …

[HTML][HTML] Orphan quality control shapes network dynamics and gene expression

KG Mark, SDD Kolla, JD Aguirre, DM Garshott… - Cell, 2023 - cell.com
All eukaryotes require intricate protein networks to translate developmental signals into
accurate cell fate decisions. Mutations that disturb interactions between network …

[HTML][HTML] DAXX-ATRX regulation of p53 chromatin binding and DNA damage response

N Gulve, C Su, Z Deng, SS Soldan… - Nature …, 2022 - nature.com
DAXX and ATRX are tumor suppressor proteins that form a histone H3. 3 chaperone
complex and are frequently mutated in cancers with the alternative lengthening of telomeres …

[HTML][HTML] An adaptive stress response that confers cellular resilience to decreased ubiquitination

LC Hunt, V Pagala, A Stephan, B Xie, K Kodali… - Nature …, 2023 - nature.com
Ubiquitination is a post-translational modification initiated by the E1 enzyme UBA1, which
transfers ubiquitin to~ 35 E2 ubiquitin-conjugating enzymes. While UBA1 loss is cell lethal, it …

Deep proteomic compound profiling with the orbitrap ascend tribrid mass spectrometer using tandem mass tags and real-time search

SR Shuken, GC McAlister, WD Barshop… - Analytical …, 2023 - ACS Publications
Tandem mass tags (TMT) and tribrid mass spectrometers are a powerful combination for
high-throughput proteomics with high quantitative accuracy. Increasingly, this technology is …