Elucidating the functions of non-coding RNAs from the perspective of RNA modifications

VNS Garikipati, S Uchida - Non-coding RNA, 2021 - mdpi.com
It is now commonly accepted that most of the mammalian genome is transcribed as RNA, yet
less than 2% of such RNA encode for proteins. A majority of transcribed RNA exists as non …

Identification and validation of a novel three hub long noncoding RNAs with m6A modification signature in low-grade gliomas

QH Nguyen, T Nguyen, DH Le - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
It has been evident that N6-methyladenosine (m6A)-modified long noncoding RNAs (m6A-
lncRNAs) involves regulating tumorigenesis, invasion, and metastasis for various cancer …

Gene and protein sequence features augment HLA class I ligand predictions

K Bresser, BP Nicolet, A Jeko, W Wu, F Loayza-Puch… - Cell Reports, 2024 - cell.com
The sensitivity of malignant tissues to T cell-based immunotherapies depends on the
presence of targetable human leukocyte antigen (HLA) class I ligands. Peptide-intrinsic …

Evaluation and development of deep neural networks for RNA 5-Methyluridine classifications using autoBioSeqpy

L Yu, Y Zhang, L Xue, F Liu, R Jing, J Luo - Frontiers in Microbiology, 2023 - frontiersin.org
Post-transcriptionally RNA modifications, also known as the epitranscriptome, play crucial
roles in the regulation of gene expression during development. Recently, deep learning (DL) …

Identification of M6a-associated gene DST as a prognostic and immune-associated biomarker in breast cancer patients

X Qiu, X Li, Y Yan, Y Cai, Q Liang, B Peng… - … journal of general …, 2022 - Taylor & Francis
Background N6-methyladenosine (m6A) is most common internal RNA modification in
eukaryotic cells. Existing evidence shows that m6A is closely related to pathogenesis and …

[HTML][HTML] DUSP5 regulated by YTHDF1-mediated m6A modification promotes epithelial-mesenchymal transition and EGFR-TKI resistance via the TGF-β/Smad …

W Fan, Y Xing, S Yan, W Liu, J Ning, F Tian… - Cancer Cell …, 2024 - ncbi.nlm.nih.gov
Background Lung adenocarcinoma (LUAD) patients have a dismal survival rate because of
cancer metastasis and drug resistance. The study aims to identify the genes that …

Coronary artery disease risk factors affected by RNA modification-related genetic variants

R Li, H Zhang, F Tang, C Duan, D Liu, N Wu… - Frontiers in …, 2022 - frontiersin.org
Background Single nucleotide polymorphisms that affect RNA modification (RNAm-SNPs)
may have functional roles in coronary artery disease (CAD). The aim of this study was to …

Serum micro-RNAs with mutation-targeted RNA modification: a potent cancer detection tool constructed using an optimized machine learning workflow

W Liao, Y Xu, M Pan, H Chen - Scientific Reports, 2024 - nature.com
RNA modifications affect fundamental biological processes and diseases and are a
research hotspot. Several micro-RNAs (miRNAs) exhibit genetic variant-targeted RNA …

[PDF][PDF] RNA modifications meet tumors

Z Yang, S Zhang, T Xia, Y Fan, Y Shan… - Cancer Management …, 2022 - Taylor & Francis
RNA modifications occur through the whole process of gene expression regulation,
including transcription, translation, and post-translational processes. They are closely …

Comprehensive review on lipid metabolism and RNA methylation: Biological mechanisms, perspectives and challenges

X Wang, M Gan, Y Wang, S Wang, Y Lei… - International Journal of …, 2024 - Elsevier
Adipose tissue plays a crucial role in maintaining energy balance, regulating hormones, and
promoting metabolic health. To address disorders related to obesity and develop effective …