[HTML][HTML] Global RNA modifications to the MALAT1 triple helix differentially affect thermostability and weaken binding to METTL16

MJ Schievelbein, C Resende, MM Glennon… - Journal of Biological …, 2024 - ASBMB
Therapeutic mRNAs are generated using modified nucleotides, namely N 1-
methylpseudouridine (m 1 Ψ) triphosphate, so that the mRNA evades detection by the …

[HTML][HTML] m6A-TCPred: a web server to predict tissue-conserved human m6A sites using machine learning approach

G Tu, X Wang, R Xia, B Song - BMC bioinformatics, 2024 - Springer
Abstract Background N6-methyladenosine (m6A) is the most prevalent post-transcriptional
modification in eukaryotic cells that plays a crucial role in regulating various biological …

Cigarette smoking combined with genetic variation regulates the m6A methylation of CRNKL1 and is associated with bladder cancer risk

J Yang, Z Ji, F Gao, J Wu, M Du, Z Zhang… - Environmental …, 2024 - Wiley Online Library
Cigarette smoking was known to accelerate the occurrence and development of bladder
cancer by regulating RNA modification. However, the association between the combination …

[HTML][HTML] AStruct: detection of allele-specific RNA secondary structure in structuromic probing data

Q Xu, X Bao, Z Lin, L Tang, L He, J Ren, Z Zuo, K Hu - BMC bioinformatics, 2024 - Springer
Background Uncovering functional genetic variants from an allele-specific perspective is of
paramount importance in advancing our understanding of gene regulation and genetic …

[HTML][HTML] A novel serum m7G-harboring microRNA signature for cancer detection

Y Chen, Y Xie, L Bi, H Ci, W Li, D Liu - Frontiers in Genetics, 2024 - frontiersin.org
Background: Emerging evidence points to the exceptional importance and value of m 7 G
alteration in the diagnosis and prognosis of cancers. Nonetheless, a biomarker for precise …

ALKHB5-demethylated lncRNA SNHG15 promotes myeloma tumorigenicity by increasing chromatin accessibility and recruiting H3K36me3 modifier SETD2

L Yao, T Li, Y Teng, J Guo, H Zhang… - American Journal of …, 2024 - journals.physiology.org
Chromatin instability plays a crucial role in multiple myeloma (MM) relapse and progression,
but its mechanism remains obscure. Here, we uncovered that m6A-demethylase ALKBH5 …

[HTML][HTML] N6-methyladenosine-associated genetic variants in NECTIN2 and HPCAL1 are risk factors for abdominal aortic aneurysm

T Li, Y Wu, J Yang, J Jing, C Ma, L Sun - Iscience, 2024 - cell.com
Summary Although N6-methyladenosine (m6A) modification has been implicated in the
pathogenesis of abdominal aortic aneurysm (AAA), the relationship between m6A …

[HTML][HTML] Dynamic regulation and key roles of ribonucleic acid methylation

J Zou, H Liu, W Tan, Y Chen, J Dong, S Bai… - Frontiers in Cellular …, 2022 - frontiersin.org
Ribonucleic acid (RNA) methylation is the most abundant modification in biological systems,
accounting for 60% of all RNA modifications, and affects multiple aspects of RNA (including …

[HTML][HTML] The hypoxic landscape stratifies gastric cancer into 3 subtypes with distinct M6a methylation and tumor microenvironment infiltration characteristics

Z Ning, C Hu, J Liu, H Tian, Z Yu, H Zhou, H Li… - Frontiers in …, 2022 - frontiersin.org
The interaction between hypoxia and RNA N6-methyladenosine (m6A) is an emerging focus
of investigation. However, alterations in m6A modifications at distinct hypoxia levels remain …

Deciphering impact of single nucleotide polymorphisms on cotranscriptional modification in CCM gene mRNAs

C Scimone, L Donato, S Alibrandi… - … of Physiology-Cell …, 2022 - journals.physiology.org
Novel insights on regulation of gene expression mechanisms highlight the pivotal role of
epitranscriptomic modifications on decision about transcript fate. These modifications …