Genome-Wide Analysis and Expression Profile of Superoxide Dismutase (SOD) Gene Family in Rapeseed (Brassica napus L.) under Different Hormones and Abiotic …

W Su, A Raza, A Gao, Z Jia, Y Zhang, MA Hussain… - Antioxidants, 2021 - mdpi.com
Superoxide dismutase (SOD) is an important enzyme that acts as the first line of protection in
the plant antioxidant defense system, involved in eliminating reactive oxygen species (ROS) …

The chromosomal organization of horizontal gene transfer in bacteria

PH Oliveira, M Touchon, J Cury, EPC Rocha - Nature communications, 2017 - nature.com
Bacterial adaptation is accelerated by the acquisition of novel traits through horizontal gene
transfer, but the integration of these genes affects genome organization. We found that …

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

S Nayfach, KS Pollard - Genome biology, 2015 - Springer
Average genome size is an important, yet often overlooked, property of microbial
communities. We developed MicrobeCensus to rapidly and accurately estimate average …

Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry

AA Pittis, T Gabaldón - Nature, 2016 - nature.com
The origin of eukaryotes stands as a major conundrum in biology. Current evidence
indicates that the last eukaryotic common ancestor already possessed many eukaryotic …

The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches

DB Dhakan, A Maji, AK Sharma, R Saxena… - …, 2019 - academic.oup.com
Background Metagenomic studies carried out in the past decade have led to an enhanced
understanding of the gut microbiome in human health; however, the Indian gut microbiome …

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study

C Milani, A Ticinesi, J Gerritsen, A Nouvenne… - Scientific reports, 2016 - nature.com
The gut microbiota composition of elderly hospitalized patients with Clostridium difficile
infection (CDI) exposed to previous antibiotic treatment is still poorly investigated. The aim of …

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

EV Kriventseva, F Tegenfeldt, TJ Petty… - Nucleic acids …, 2015 - academic.oup.com
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …

Exploring vertical transmission of bifidobacteria from mother to child

C Milani, L Mancabelli, GA Lugli, S Duranti… - Applied and …, 2015 - Am Soc Microbiol
Passage through the birth canal and consequent exposure to the mother's microbiota is
considered to represent the initiating event for microbial colonization of the gastrointestinal …

[HTML][HTML] Standardized benchmarking in the quest for orthologs

AM Altenhoff, B Boeckmann, S Capella-Gutierrez… - Nature …, 2016 - nature.com
Achieving high accuracy in orthology inference is essential for many comparative,
evolutionary and functional genomic analyses, yet the true evolutionary history of genes is …

A clinician's guide to microbiome analysis

MJ Claesson, AG Clooney, PW O'toole - … Reviews Gastroenterology & …, 2017 - nature.com
Microbiome analysis involves determining the composition and function of a community of
microorganisms in a particular location. For the gastroenterologist, this technology opens up …