Phenotypic characterization of a comprehensive set of MAPK1/ERK2 missense mutants

L Brenan, A Andreev, O Cohen, S Pantel, A Kamburov… - Cell reports, 2016 - cell.com
Tumor-specific genomic information has the potential to guide therapeutic strategies and
revolutionize patient treatment. Currently, this approach is limited by an abundance of …

Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database

T Liu, M Li, Z Liu, X Ai, Y Li - Horticulture research, 2021 - academic.oup.com
Cultivated strawberry (Fragaria× ananassa) is an important fruit crop species whose fruits
are enjoyed by many worldwide. An octoploid of hybrid origin, the complex genome of this …

EffectiveDB—updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems

V Eichinger, T Nussbaumer, A Platzer… - Nucleic acids …, 2016 - academic.oup.com
Protein secretion systems play a key role in the interaction of bacteria and hosts. EffectiveDB
(http://effectivedb. org) contains pre-calculated predictions of bacterial secreted proteins and …

Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?

N Ward, G Moreno-Hagelsieb - PloS one, 2014 - journals.plos.org
Reciprocal Best Hits (RBH) are a common proxy for orthology in comparative genomics.
Essentially, a RBH is found when the proteins encoded by two genes, each in a different …

Comparison of healthy and dandruff scalp microbiome reveals the role of commensals in scalp health

R Saxena, P Mittal, C Clavaud, DB Dhakan… - Frontiers in cellular …, 2018 - frontiersin.org
Several scalp microbiome studies from different populations have revealed the association
of dandruff with bacterial and fungal dysbiosis. However, the functional role of scalp …

Metagenomic insights into the structure and function of intestinal microbiota of the farmed Pacific white shrimp (Litopenaeus vannamei)

S Gao, L Pan, F Huang, M Song, C Tian, M Zhang - Aquaculture, 2019 - Elsevier
Intestinal microbiota plays a vital role in host's physiology, development, and behavior.
However, these functions in Pacific white shrimp (Litopenaeus vannamei) are still largely …

Genome-Wide Characterization of Ascorbate Peroxidase Gene Family in Peanut (Arachis hypogea L.) Revealed Their Crucial Role in Growth and Multiple Stress …

A Raza, Y Sharif, K Chen, L Wang, H Fu… - Frontiers in Plant …, 2022 - frontiersin.org
Ascorbate peroxidase (APX), an important antioxidant enzyme, plays a significant role in
ROS scavenging by catalyzing the decrease of hydrogen peroxide under various …

The preceding root system drives the composition and function of the rhizosphere microbiome

Y Zhou, DR Coventry, VVSR Gupta, D Fuentes… - Genome biology, 2020 - Springer
Background The soil environment is responsible for sustaining most terrestrial plant life, yet
we know surprisingly little about the important functions carried out by diverse microbial …

Metagenomics reveals mechanism of pyrene degradation by an enriched bacterial consortium from a coking site contaminated with PAHs

Q Wang, J Hou, Y Huang, W Liu, P Christie - Science of The Total …, 2023 - Elsevier
A bacterial consortium, termed WPB, was obtained from polycyclic aromatic hydrocarbons
(PAHs) contaminated soil from a coking site. The consortium effectively degraded 100 mg L …

Inulin-enriched Megamonas funiformis ameliorates metabolic dysfunction-associated fatty liver disease by producing propionic acid

X Yang, M Zhang, Y Liu, F Wei, X Li, Y Feng… - npj Biofilms and …, 2023 - nature.com
Accumulated evidence supports the beneficial role of inulin in alleviating metabolic
dysfunction-associated fatty liver disease (MAFLD) by modulating gut microbiota. However …