PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

P Minguez, I Letunic, L Parca… - Nucleic acids …, 2015 - academic.oup.com
The post-translational regulation of proteins is mainly driven by two molecular events, their
modification by several types of moieties and their interaction with other proteins. These two …

The history of Bordetella pertussis genome evolution includes structural rearrangement

MR Weigand, Y Peng, V Loparev, D Batra… - Journal of …, 2017 - Am Soc Microbiol
Despite high pertussis vaccine coverage, reported cases of whooping cough (pertussis)
have increased over the last decade in the United States and other developed countries …

Recurrent horizontal transfer of arsenite methyltransferase genes facilitated adaptation of life to arsenic

SC Chen, GX Sun, BP Rosen, SY Zhang, Y Deng… - Scientific Reports, 2017 - nature.com
The toxic metalloid arsenic has been environmentally ubiquitous since life first arose nearly
four billion years ago and presents a challenge for the survival of all living organisms. Its …

Identification of a 17β-estradiol-degrading Microbacterium hominis SJTG1 with high adaptability and characterization of the genes for estrogen degradation

W Xiong, W Peng, Y Fu, Z Deng, S Lin… - Journal of Hazardous …, 2023 - Elsevier
Environmental estrogen contamination poses severe threat to wildlife and human.
Biodegradation is an efficient strategy to remove the wide-spread natural estrogen, while …

Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio …

AE Velazquez-Lizarraga, JL Juárez-Morales… - PLoS …, 2019 - journals.plos.org
Acute hepatopancreatic necrosis disease (AHPND), caused by marine bacteria Vibrio
Parahaemolyticus, is a huge problem in shrimp farms. The V. parahaemolyticus infecting …

Gut microbiome and its meta-omics perspectives: profound implications for cardiovascular diseases

J Xu, Y Yang - Gut Microbes, 2021 - Taylor & Francis
Cardiovascular diseases (CVDs) still remain the leading concern of global health,
accounting for approximately 17.9 million deaths in 2016. The pathogenetic mechanisms of …

Microbiome structure and function in rhizosphere of Jerusalem artichoke grown in saline land

Y Yue, T Shao, X Long, T He, X Gao, Z Zhou… - Science of the Total …, 2020 - Elsevier
The improvement and development of saline-alkali soils is currently a hot economic and
scientific issue, and exploring the correlation between rhizosphere microorganisms of plants …

Big data and other challenges in the quest for orthologs

ELL Sonnhammer, T Gabaldón… - …, 2014 - academic.oup.com
Given the rapid increase of species with a sequenced genome, the need to identify
orthologous genes between them has emerged as a central bioinformatics task. Many …

Determining microbial products and identifying molecular targets in the human microbiome

R Joice, K Yasuda, A Shafquat, XC Morgan… - Cell metabolism, 2014 - cell.com
Human-associated microbes are the source of many bioactive microbial products (proteins
and metabolites) that play key functions both in human host pathways and in microbe …

Progress of analytical tools and techniques for human gut microbiome research

EJ Song, ES Lee, YD Nam - Journal of Microbiology, 2018 - Springer
Massive DNA sequencing studies have expanded our insights and understanding of the
ecological and functional characteristics of the gut microbiome. Advanced sequencing …