[HTML][HTML] The evolving definition of plant cell type

S Amini, JJ Doyle, M Libault - Frontiers in Plant Science, 2023 - frontiersin.org
In 1665 Robert Hooke, looking at cork through his microscope, discovered that plants are
composed of elementary structures he named “cells”. Variation in the expression of a single …

Precision treatment in advanced hepatocellular carcinoma

X Yang, C Yang, S Zhang, H Geng, AX Zhu… - Cancer Cell, 2024 - cell.com
The past decade has witnessed significant advances in the systemic treatment of advanced
hepatocellular carcinoma (HCC). Nevertheless, the newly developed treatment strategies …

[HTML][HTML] Voyager: exploratory single-cell genomics data analysis with geospatial statistics

L Moses, PH Einarsson, K Jackson, L Luebbert… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Exploratory spatial data analysis (ESDA) can be a powerful approach to understanding
single-cell genomics datasets, but it is not yet part of standard data analysis workflows. In …

[HTML][HTML] Biophysically interpretable inference of cell types from multimodal sequencing data

T Chari, G Gorin, L Pachter - bioRxiv, 2023 - ncbi.nlm.nih.gov
Multimodal, single-cell genomics technologies enable simultaneous capture of multiple
facets of DNA and RNA processing in the cell. This creates opportunities for transcriptome …

[HTML][HTML] Single-Cell Sequencing in Neurodegenerative Disorders

J Pozojevic, M Spielmann - Molecular Diagnosis & Therapy, 2023 - Springer
Neurodegenerative disorders are typically characterized by late onset progressive damage
to specific (sub) populations of cells of the nervous system that are essential for mobility …

[HTML][HTML] Reconstructing axial progenitor field dynamics in mouse stem cell-derived embryoids

A Bolondi, BK Law, H Kretzmer, SI Gassaloglu… - Developmental cell, 2024 - cell.com
Embryogenesis requires substantial coordination to translate genetic programs to the
collective behavior of differentiating cells, but understanding how cellular decisions control …

[HTML][HTML] The organization of spinal neurons: Insights from single cell sequencing

RB Roome, AJ Levine - Current Opinion in Neurobiology, 2023 - Elsevier
To understand how the spinal cord enacts complex sensorimotor functions, researchers
have studied, classified, and functionally probed it's many neuronal populations for over a …

[HTML][HTML] Partial label learning for automated classification of single-cell transcriptomic profiles

M Senoussi, T Artieres, P Villoutreix - PLOS Computational …, 2024 - journals.plos.org
Single-cell RNA sequencing (scRNASeq) data plays a major role in advancing our
understanding of developmental biology. An important current question is how to classify …

[HTML][HTML] Programming human cell fate: overcoming challenges and unlocking potential through technological breakthroughs

HC Lin, A Makhlouf, C Vazquez Echegaray… - …, 2023 - journals.biologists.com
In recent years, there have been notable advancements in the ability to programme human
cell identity, enabling us to design and manipulate cell function in a Petri dish. However …

[HTML][HTML] scDOT: enhancing single-cell RNA-Seq data annotation and uncovering novel cell types through multi-reference integration

YX Xiong, XF Zhang - Briefings in Bioinformatics, 2024 - academic.oup.com
The proliferation of single-cell RNA-seq data has greatly enhanced our ability to
comprehend the intricate nature of diverse tissues. However, accurately annotating cell …