Allometry of cell types in planarians by single cell transcriptomics

E Emili, A Pérez-Posada, MD Christodoulou, J Solana - bioRxiv, 2023 - biorxiv.org
Allometry explores the relationship between an organism's body size and its various
components, offering insights into ecology, physiology, metabolism, and disease. The cell is …

Complementing cell taxonomies with a multicellular analysis of tissues

RO Ramirez Flores, PSL Schäfer, L Küchenhoff… - …, 2024 - journals.physiology.org
The application of single cell molecular profiling coupled with spatial technologies has
enabled charting cellular heterogeneity in reference tissues and in disease. This new wave …

A new dawn for the study of cell type evolution

MB Pomaville, SM Sattler, PB Abitua - Development, 2024 - journals.biologists.com
Animal evolution is influenced by the emergence of new cell types, yet our understanding of
this process remains elusive. This prompts the need for a broader exploration across diverse …

LoxCode in vivo barcoding resolves epiblast clonal fate to fetal organs

TS Weber, C Biben, DC Miles, S Glaser, S Tomei… - bioRxiv, 2023 - biorxiv.org
Contribution of the mammalian epiblast to fetal organs during embryogenesis has been
investigated using reporters of marker genes, or through single cell or spatial RNA …

Unveiling inflammatory and prehypertrophic cell populations as key contributors to knee cartilage degeneration in osteoarthritis using multi-omics data integration

Y Fan, X Bian, X Meng, L Li, L Fu, Y Zhang… - Annals of the …, 2024 - ard.bmj.com
Objectives Single-cell and spatial transcriptomics analysis of human knee articular cartilage
tissue to present a comprehensive transcriptome landscape and osteoarthritis (OA)-critical …

Reconstructing cell histories in space with image-readable base editor recording

DM Chadly, KL Frieda, C Gui, L Klock, M Tran, MY Sui… - bioRxiv, 2024 - biorxiv.org
Knowing the ancestral states and lineage relationships of individual cells could unravel the
dynamic programs underlying development. Engineering cells to actively record information …

Unification of species, gene, and cell trees for single-cell expression analyses

SH Church, JL Mah, CW Dunn - arXiv preprint arXiv:2307.02561, 2023 - arxiv.org
Comparisons of single-cell RNA sequencing (scRNA-seq) data across species can reveal
links between cellular gene expression and the evolution of cell functions, features, and …

Algorithms for a Commons Cell Atlas

AS Booeshaghi, Á Gálvez-Merchán, L Pachter - bioRxiv, 2024 - biorxiv.org
Cell atlas projects curate representative datasets, cell types, and marker genes for tissues
across an organism. Despite their ubiquity, atlas projects rely on duplicated and manual …

Distinct Gene Regulatory Dynamics Drive Skeletogenic Cell Fate Convergence During Vertebrate Embryogenesis

M Wang, A Di Pietro-Torres, C Feregrino, M Luxey… - bioRxiv, 2024 - biorxiv.org
Cell type repertoires have expanded extensively in metazoan animals, with some clade-
specific cells being paramount to their evolutionary success. A prime example are the …

A call for a unified and multimodal definition of cellular identity in the enteric nervous system

H Majd, A Cesiulis, RM Samuel, MN Richter, N Elder… - bioRxiv, 2024 - biorxiv.org
The enteric nervous system (ENS) is a tantalizing frontier in neuroscience. With the recent
emergence of single cell transcriptomic technologies, this rare and poorly understood tissue …