Tools to support the automation of systematic reviews: a scoping review
H Khalil, D Ameen, A Zarnegar - Journal of Clinical Epidemiology, 2022 - Elsevier
Objective The objectives of this scoping review are to identify the reliability and validity of the
available tools, their limitations and any recommendations to further improve the use of …
available tools, their limitations and any recommendations to further improve the use of …
[HTML][HTML] PubMed and beyond: biomedical literature search in the age of artificial intelligence
Biomedical research yields vast information, much of which is only accessible through the
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …
Annotation of biologically relevant ligands in UniProtKB using ChEBI
E Coudert, S Gehant, E De Castro, M Pozzato… - …, 2023 - academic.oup.com
Motivation To provide high quality, computationally tractable annotation of binding sites for
biologically relevant (cognate) ligands in UniProtKB using the chemical ontology ChEBI …
biologically relevant (cognate) ligands in UniProtKB using the chemical ontology ChEBI …
UniProt: the universal protein knowledgebase in 2023
Nucleic acids research, 2023 - academic.oup.com
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-
quality and freely accessible set of protein sequences annotated with functional information …
quality and freely accessible set of protein sequences annotated with functional information …
Rhea, the reaction knowledgebase in 2022
P Bansal, A Morgat, KB Axelsen… - Nucleic acids …, 2022 - academic.oup.com
Abstract Rhea (https://www. rhea-db. org) is an expert-curated knowledgebase of
biochemical reactions based on the chemical ontology ChEBI (Chemical Entities of …
biochemical reactions based on the chemical ontology ChEBI (Chemical Entities of …
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms
Abstract Echinobase (www. echinobase. org) is a third generation web resource supporting
genomic research on echinoderms. The new version was built by cloning the mature …
genomic research on echinoderms. The new version was built by cloning the mature …
LitCovid in 2022: an information resource for the COVID-19 literature
Abstract LitCovid (https://www. ncbi. nlm. nih. gov/research/coronavirus/)—first launched in
February 2020—is a first-of-its-kind literature hub for tracking up-to-date published research …
February 2020—is a first-of-its-kind literature hub for tracking up-to-date published research …
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations
Abstract The coronavirus disease 2019 (COVID-19) pandemic has been severely impacting
global society since December 2019. The related findings such as vaccine and drug …
global society since December 2019. The related findings such as vaccine and drug …
A roadmap for the functional annotation of protein families: a community perspective
Over the last 25 years, biology has entered the genomic era and is becoming a science of
'big data'. Most interpretations of genomic analyses rely on accurate functional annotations …
'big data'. Most interpretations of genomic analyses rely on accurate functional annotations …
[PDF][PDF] Overview of the BioCreative VII LitCovid Track: multi-label topic classification for COVID-19 literature annotation
The BioCreative LitCovid track calls for a community effort to tackle automated topic
annotation for COVID-19 literature. The number of COVID-19-related articles in the literature …
annotation for COVID-19 literature. The number of COVID-19-related articles in the literature …