Transformation-associated recombination (TAR) cloning for genomics studies and synthetic biology

N Kouprina, V Larionov - Chromosoma, 2016 - Springer
Transformation-associated recombination (TAR) cloning represents a unique tool for
isolation and manipulation of large DNA molecules. The technique exploits a high level of …

TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution

N Kouprina, V Larionov - Nature Reviews Genetics, 2006 - nature.com
The structural and functional analysis of mammalian genomes would benefit from the ability
to isolate from multiple DNA samples any targeted chromosomal segment that is the size of …

[HTML][HTML] Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

D Aird, MG Ross, WS Chen, M Danielsson, T Fennell… - Genome biology, 2011 - Springer
Despite the ever-increasing output of Illumina sequencing data, loci with extreme base
compositions are often under-represented or absent. To evaluate sources of base …

Selective isolation of genomic loci from complex genomes by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae

N Kouprina, V Larionov - Nature protocols, 2008 - nature.com
Here, we describe a protocol for the selective isolation of any genomic fragment or gene of
interest up to 250 kb in size from complex genomes as a circular yeast artificial chromosome …

The structure and evolution of centromeric transition regions within the human genome

X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ… - Nature, 2004 - nature.com
An understanding of how centromeric transition regions are organized is a critical aspect of
chromosome structure and function; however, the sequence context of these regions has …

[HTML][HTML] Analysis of the largest tandemly repeated DNA families in the human genome

PE Warburton, D Hasson, F Guillem, C Lescale, X Jin… - BMC genomics, 2008 - Springer
Abstract Background Tandemly Repeated DNA represents a large portion of the human
genome, and accounts for a significant amount of copy number variation. Here we present a …

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing

JH Kim, AT Dilthey, R Nagaraja, HS Lee… - Nucleic acids …, 2018 - academic.oup.com
Despite the key role of the human ribosome in protein biosynthesis, little is known about the
extent of sequence variation in ribosomal DNA (rDNA) or its pre-rRNA and rRNA products …

Differential cis-regulation of human versus mouse TERT gene expression in vivo: Identification of a human-specific repressive element

I Horikawa, YJ Chiang, T Patterson… - Proceedings of the …, 2005 - National Acad Sciences
In vivo expression of human telomerase is significantly different from that of mouse
telomerase. To assess the basis for this difference, a bacterial artificial chromosome clone …

[HTML][HTML] Sequencing of long stretches of repetitive DNA

A De Bustos, A Cuadrado, N Jouve - Scientific reports, 2016 - nature.com
Repetitive DNA is widespread in eukaryotic genomes, in some cases making up more than
80% of the total. SSRs are a type of repetitive DNA formed by short motifs repeated in …

Highly selective, CRISPR/Cas9‐mediated isolation of genes and genomic loci from complex genomes by TAR cloning in yeast

N Kouprina, JH Kim, V Larionov - Current protocols, 2021 - Wiley Online Library
Here we describe an updated TAR cloning protocol for the selective and efficient isolation of
any genomic fragment or gene of interest up to 280 kb in size from genomic DNA. The …