[HTML][HTML] Modification mapping by nanopore sequencing

LK White, JR Hesselberth - Frontiers in Genetics, 2022 - frontiersin.org
Next generation sequencing (NGS) has provided biologists with an unprecedented view into
biological processes and their regulation over the past 2 decades, fueling a wave of …

Imprinted genes and the manipulation of parenting in mammals

RM John, MJ Higgs, AR Isles - Nature Reviews Genetics, 2023 - nature.com
Genomic imprinting refers to the parent-of-origin expression of genes, which originates from
epigenetic events in the mammalian germ line. The evolution of imprinting may reflect a …

DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing

P Ni, F Nie, Z Zhong, J Xu, N Huang, J Zhang… - Nature …, 2023 - nature.com
Long single-molecular sequencing technologies, such as PacBio circular consensus
sequencing (CCS) and nanopore sequencing, are advantageous in detecting DNA 5 …

[HTML][HTML] Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation

JA Gustafson, SB Gibson, N Damaraju, MPG Zalusky… - medRxiv, 2024 - ncbi.nlm.nih.gov
Less than half of individuals with a suspected Mendelian condition receive a precise
molecular diagnosis after comprehensive clinical genetic testing. Improvements in data …

The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes

DM Bond, O Ortega-Recalde, MK Laird… - Nature …, 2023 - nature.com
Combining genome assembly with population and functional genomics can provide
valuable insights to development and evolution, as well as tools for species management …

[PDF][PDF] Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq

V Akbari, VCT Hanlon, K O'Neill, L Lefebvre… - Cell Genomics, 2023 - cell.com
Hundreds of loci in human genomes have alleles that are methylated differentially according
to their parent of origin. These imprinted loci generally show little variation across tissues …

The Next, Next-Generation of Sequencing, Promising to Boost Research and Clinical Practice

KR Kumar, MJ Cowley, RL Davis - Seminars in Thrombosis …, 2024 - thieme-connect.com
Five years on from our award-winning review on Nextgeneration sequencing and emerging
technologies, 1 a rapid pace of fundamental advances has markedly altered the landscape …

Challenges and approaches to studying pore-forming proteins

JT Benton, C Bayly-Jones - Biochemical Society Transactions, 2021 - portlandpress.com
Pore-forming proteins (PFPs) are a broad class of molecules that comprise various families,
structural folds, and assembly pathways. In nature, PFPs are most often deployed by their …

Detection of DNA methylation signatures through the lens of genomic imprinting

JN Hubert, N Iannuccelli, C Cabau, E Jacomet… - Scientific Reports, 2024 - nature.com
Genomic imprinting represents an original model of epigenetic regulation resulting in a
parent-of-origin expression. Despite the critical role of imprinted genes in mammalian …

Chromosome-level, nanopore-only genome and allele-specific DNA methylation of Pallas's cat, Otocolobus manul

N Flack, M Drown, C Walls, J Pratte… - NAR Genomics and …, 2023 - academic.oup.com
Pallas's cat, or the manul cat (Otocolobus manul), is a small felid native to the grasslands
and steppes of central Asia. Population strongholds in Mongolia and China face growing …