[HTML][HTML] The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth

KE De Visser, JA Joyce - Cancer cell, 2023 - cell.com
Cancers represent complex ecosystems comprising tumor cells and a multitude of non-
cancerous cells, embedded in an altered extracellular matrix. The tumor microenvironment …

Liquid biopsy: from discovery to clinical application

C Alix-Panabières, K Pantel - Cancer discovery, 2021 - AACR
Over the past 10 years, circulating tumor cells (CTC) and circulating tumor DNA (ctDNA)
have received enormous attention as new biomarkers and subjects of translational research …

Spatial biology of cancer evolution

Z Seferbekova, A Lomakin, LR Yates… - Nature Reviews …, 2023 - nature.com
The natural history of cancers can be understood through the lens of evolution given that the
driving forces of cancer development are mutation and selection of fitter clones. Cancer …

Single-cell atlas of tumor cell evolution in response to therapy in hepatocellular carcinoma and intrahepatic cholangiocarcinoma

L Ma, L Wang, SA Khatib, CW Chang, S Heinrich… - Journal of …, 2021 - Elsevier
Background & Aims Intratumor molecular heterogeneity is a key feature of tumorigenesis
and is linked to treatment failure and patient prognosis. Herein, we aimed to determine what …

Recent developments in application of single-cell RNA sequencing in the tumour immune microenvironment and cancer therapy

PH Li, XY Kong, YZ He, Y Liu, X Peng, ZH Li… - Military Medical …, 2022 - Springer
The advent of single-cell RNA sequencing (scRNA-seq) has provided insight into the tumour
immune microenvironment (TIME). This review focuses on the application of scRNA-seq in …

Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface

MV Hunter, R Moncada, JM Weiss, I Yanai… - Nature …, 2021 - nature.com
During tumor progression, cancer cells come into contact with various non-tumor cell types,
but it is unclear how tumors adapt to these new environments. Here, we integrate spatially …

Learning single-cell perturbation responses using neural optimal transport

C Bunne, SG Stark, G Gut, JS Del Castillo… - Nature …, 2023 - nature.com
Understanding and predicting molecular responses in single cells upon chemical, genetic or
mechanical perturbations is a core question in biology. Obtaining single-cell measurements …

Computational immunogenomic approaches to predict response to cancer immunotherapies

V Addala, F Newell, JV Pearson, A Redwood… - Nature Reviews …, 2024 - nature.com
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The
establishment of large-scale genomic collaborative efforts along with the development of …

Diagnostic classification of childhood cancer using multiscale transcriptomics

F Comitani, JO Nash, S Cohen-Gogo, AI Chang… - Nature medicine, 2023 - nature.com
The causes of pediatric cancers' distinctiveness compared to adult-onset tumors of the same
type are not completely clear and not fully explained by their genomes. In this study, we …

[HTML][HTML] Therapeutic cancer vaccines revamping: technology advancements and pitfalls

G Antonarelli, C Corti, P Tarantino, L Ascione… - Annals of …, 2021 - Elsevier
Highlights•CVs have been characterized by positive safety and immunogenicity profiles but
low levels of clinical efficacy.•Novel CV strategies entail personalized formulations and …