[HTML][HTML] Empowering digital pathology applications through explainable knowledge extraction tools

S Marchesin, F Giachelle, N Marini, M Atzori… - Journal of pathology …, 2022 - Elsevier
Exa-scale volumes of medical data have been produced for decades. In most cases, the
diagnosis is reported in free text, encoding medical knowledge that is still largely …

[HTML][HTML] Web-based application based on human-in-the-loop deep learning for deidentifying free-text data in electronic medical records: development and usability …

L Liu, O Perez-Concha, A Nguyen, V Bennett… - Interactive Journal of …, 2023 - i-jmr.org
Background The narrative free-text data in electronic medical records (EMRs) contain
valuable clinical information for analysis and research to inform better patient care …

MetaTron: advancing biomedical annotation empowering relation annotation and collaboration

O Irrera, S Marchesin, G Silvello - BMC bioinformatics, 2024 - Springer
Background The constant growth of biomedical data is accompanied by the need for new
methodologies to effectively and efficiently extract machine-readable knowledge for training …

[HTML][HTML] Modelling digital health data: The ExaMode ontology for computational pathology

L Menotti, G Silvello, M Atzori, S Boytcheva… - Journal of Pathology …, 2023 - Elsevier
Computational pathology can significantly benefit from ontologies to standardize the
employed nomenclature and help with knowledge extraction processes for high-quality …

[HTML][HTML] Determining and assessing characteristics of data element names impacting the performance of annotation using Usagi

R de Groot, DP Püttmann, LM Fleuren, PJ Thoral… - International Journal of …, 2023 - Elsevier
Introduction Hospitals generate large amounts of data and this data is generally modeled
and labeled in a proprietary way, hampering its exchange and integration. Manually …

DocTAG: a customizable annotation tool for ground truth creation

F Giachelle, O Irrera, G Silvello - European Conference on Information …, 2022 - Springer
Abstract Information Retrieval (IR) is a discipline deeply rooted on evaluation that in many
cases relies on annotated data as ground truth. Manual annotation is a demanding and time …

Surveying the FAIRness of Annotation Tools: Difficult to find, difficult to reuse

E Borisova, RA Ahmad, L Garcia-Castro… - Proceedings of The …, 2024 - aclanthology.org
In the realm of Machine Learning and Deep Learning, there is a need for high-quality
annotated data to train and evaluate supervised models. An extensive number of annotation …

[PDF][PDF] Are End-Users Participating in the Life Cycle of Healthcare Application Development? An Analysis of the Opportunities and Challenges of the Use of HCI …

J Silva, A Araújo, F Coutinho, A Silva - BIOSTEC (2), 2024 - scitepress.org
Health information systems (HIS) play a fundamental role in society, providing a solid
technological basis for collecting, storing, processing, and making decisions in the …

Using machine learning for automated de-identification and clinical coding of free text data in electronic medical records

L Liu - 2023 - unsworks.unsw.edu.au
With Electronic Medical Records (EMRs) being widely adopted in hospitals around the
world, they accelerate the transition of documenting patient-related data from paperbased to …

[PDF][PDF] SKET: an Unsupervised Knowledge Extraction Tool to Empower Digital Pathology Applications.

GM Di Nunzio, N Ferro, F Giachelle, O Irrera… - IRCDL, 2023 - ceur-ws.org
Large volumes of medical data have been produced for decades. These data include
diagnoses, which are often reported as free text, thus encoding medical knowledge that is …