Defining cell types and states with single-cell genomics

C Trapnell - Genome research, 2015 - genome.cshlp.org
A revolution in cellular measurement technology is under way: For the first time, we have the
ability to monitor global gene regulation in thousands of individual cells in a single …

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

JA Dahl, I Jung, H Aanes, GD Greggains, A Manaf… - Nature, 2016 - nature.com
Maternal-to-zygotic transition (MZT) is essential for the formation of a new individual, but is
still poorly understood despite recent progress in analysis of gene expression and DNA …

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

F Buettner, KN Natarajan, FP Casale, V Proserpio… - Nature …, 2015 - nature.com
Recent technical developments have enabled the transcriptomes of hundreds of cells to be
assayed in an unbiased manner, opening up the possibility that new subpopulations of cells …

[HTML][HTML] Design and computational analysis of single-cell RNA-sequencing experiments

R Bacher, C Kendziorski - Genome biology, 2016 - Springer
Single-cell RNA-sequencing (scRNA-seq) has emerged as a revolutionary tool that allows
us to address scientific questions that eluded examination just a few years ago. With the …

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq

P Blakeley, NME Fogarty, I Del Valle… - …, 2015 - journals.biologists.com
Here, we provide fundamental insights into early human development by single-cell RNA-
sequencing of human and mouse preimplantation embryos. We elucidate conserved …

Single-cell RNA-seq: advances and future challenges

AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …

[PDF][PDF] Advances and applications of single-cell sequencing technologies

Y Wang, NE Navin - Molecular cell, 2015 - cell.com
Single-cell sequencing (SCS) has emerged as a powerful new set of technologies for
studying rare cells and delineating complex populations. Over the past 5 years, SCS …

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

EJ Grow, RA Flynn, SL Chavez, NL Bayless… - Nature, 2015 - nature.com
Endogenous retroviruses (ERVs) are remnants of ancient retroviral infections, and comprise
nearly 8% of the human genome. The most recently acquired human ERV is HERVK (HML …

Single‐cell RNA sequencing in breast cancer: Understanding tumor heterogeneity and paving roads to individualized therapy

S Ding, X Chen, K Shen - Cancer Communications, 2020 - Wiley Online Library
Single‐cell RNA sequencing (scRNA‐seq) is a novel technology that allows transcriptomic
analyses of individual cells. During the past decade, scRNA‐seq sensitivity, accuracy, and …

Chromatin analysis in human early development reveals epigenetic transition during ZGA

J Wu, J Xu, B Liu, G Yao, P Wang, Z Lin, B Huang… - Nature, 2018 - nature.com
Upon fertilization, drastic chromatin reorganization occurs during preimplantation
development. However, the global chromatin landscape and its molecular dynamics in this …