Conservation and innovation in the DUX4-family gene network

JL Whiddon, AT Langford, CJ Wong, JW Zhong… - Nature …, 2017 - nature.com
Abstract Facioscapulohumeral dystrophy (FSHD; MIM 158900, MIM 158901) is caused by
misexpression of the DUX4 transcription factor in skeletal muscle. Animal models of FSHD …

[HTML][HTML] Identifying cell populations with scRNASeq

TS Andrews, M Hemberg - Molecular aspects of medicine, 2018 - Elsevier
Single-cell RNASeq (scRNASeq) has emerged as a powerful method for quantifying the
transcriptome of individual cells. However, the data from scRNASeq experiments is often …

SINCERA: a pipeline for single-cell RNA-Seq profiling analysis

M Guo, H Wang, SS Potter, JA Whitsett… - PLoS computational …, 2015 - journals.plos.org
A major challenge in developmental biology is to understand the genetic and cellular
processes/programs driving organ formation and differentiation of the diverse cell types that …

Zygotic genome activation during the maternal-to-zygotic transition

MT Lee, AR Bonneau, AJ Giraldez - Annual review of cell and …, 2014 - annualreviews.org
Embryogenesis depends on a highly coordinated cascade of genetically encoded events. In
animals, maternal factors contributed by the egg cytoplasm initially control development …

Deconstructing and reconstructing the mouse and human early embryo

MN Shahbazi, M Zernicka-Goetz - Nature cell biology, 2018 - nature.com
The emergence of form and function during mammalian embryogenesis is a complex
process that involves multiple regulatory levels. The foundations of the body plan are laid …

Decoding the regulatory network of early blood development from single-cell gene expression measurements

V Moignard, S Woodhouse, L Haghverdi, AJ Lilly… - Nature …, 2015 - nature.com
Reconstruction of the molecular pathways controlling organ development has been
hampered by a lack of methods to resolve embryonic progenitor cells. Here we describe a …

Remodeling of maternal mRNA through poly (A) tail orchestrates human oocyte-to-embryo transition

Y Liu, H Zhao, F Shao, Y Zhang, H Nie… - Nature structural & …, 2023 - nature.com
Abstract Poly (A)-tail-mediated post-transcriptional regulation of maternal mRNAs is vital in
the oocyte-to-embryo transition (OET). Nothing is known about poly (A) tail dynamics during …

[PDF][PDF] Establishing chromatin regulatory landscape during mouse preimplantation development

F Lu, Y Liu, A Inoue, T Suzuki, K Zhao, Y Zhang - Cell, 2016 - cell.com
How the chromatin regulatory landscape in the inner cell mass cells is established from
differentially packaged sperm and egg genomes during preimplantation development is …

A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

KD Korthauer, LF Chu, MA Newton, Y Li, J Thomson… - Genome biology, 2016 - Springer
The ability to quantify cellular heterogeneity is a major advantage of single-cell
technologies. However, statistical methods often treat cellular heterogeneity as a nuisance …

[PDF][PDF] Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells

J Göke, X Lu, YS Chan, HH Ng, LH Ly, F Sachs… - Cell stem cell, 2015 - cell.com
About half of the human genome consists of highly repetitive elements, most of which are
considered dispensable for human life. Here, we report that repetitive elements originating …