[PDF][PDF] Histone demethylase expression enhances human somatic cell nuclear transfer efficiency and promotes derivation of pluripotent stem cells

YG Chung, S Matoba, Y Liu, JH Eum, F Lu, W Jiang… - Cell stem cell, 2015 - cell.com
The extremely low efficiency of human embryonic stem cell (hESC) derivation using somatic
cell nuclear transfer (SCNT) limits its potential application. Blastocyst formation from human …

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape

L Veselovska, SA Smallwood, H Saadeh, KR Stewart… - Genome biology, 2015 - Springer
Background Previously, a role was demonstrated for transcription in the acquisition of DNA
methylation at imprinted control regions in oocytes. Definition of the oocyte DNA methylome …

CMF-Impute: an accurate imputation tool for single-cell RNA-seq data

J Xu, L Cai, B Liao, W Zhu, JL Yang - Bioinformatics, 2020 - academic.oup.com
Motivation Single-cell RNA-sequencing (scRNA-seq) technology provides a powerful tool for
investigating cell heterogeneity and cell subpopulations by allowing the quantification of …

[PDF][PDF] Single-cell 5-formylcytosine landscapes of mammalian early embryos and ESCs at single-base resolution

C Zhu, Y Gao, H Guo, B Xia, J Song, X Wu, H Zeng… - Cell stem cell, 2017 - cell.com
Active DNA demethylation in mammals involves ten-eleven translocation (TET) family
protein-mediated oxidation of 5-methylcytosine (5mC). However, base-resolution …

Human oocyte developmental potential is predicted by mechanical properties within hours after fertilization

LZ Yanez, J Han, BB Behr, RAR Pera… - Nature …, 2016 - nature.com
The causes of embryonic arrest during pre-implantation development are poorly understood.
Attempts to correlate patterns of oocyte gene expression with successful embryo …

Single-cell sequencing in stem cell biology

L Wen, F Tang - Genome biology, 2016 - Springer
Cell-to-cell variation and heterogeneity are fundamental and intrinsic characteristics of stem
cell populations, but these differences are masked when bulk cells are used for omic …

Totipotency: what it is and what it is not

ML Condic - Stem cells and development, 2014 - liebertpub.com
There is surprising confusion surrounding the concept of biological totipotency, both within
the scientific community and in society at large. Increasingly, ethical objections to scientific …

[PDF][PDF] Tracing cell-type evolution by cross-species comparison of cell atlases

J Wang, H Sun, M Jiang, J Li, P Zhang, H Chen, Y Mei… - Cell Reports, 2021 - cell.com
Cell types are the basic building units of multicellular life, with extensive diversities. The
evolution of cell types is a crucial layer of comparative cell biology but is thus far not …

Use of the Fluidigm C1 platform for RNA sequencing of single mouse pancreatic islet cells

Y Xin, J Kim, M Ni, Y Wei, H Okamoto… - Proceedings of the …, 2016 - National Acad Sciences
This study provides an assessment of the Fluidigm C1 platform for RNA sequencing of
single mouse pancreatic islet cells. The system combines microfluidic technology and …

Reprogrammed blastoids contain amnion-like cells but not trophectoderm

C Zhao, AP Reyes, JP Schell, J Weltner, N M. Ortega… - biorxiv, 2021 - biorxiv.org
With the advancement of human stem cell cultures and interest in understanding human
embryogenesis, human blastocyst-like structures, or human blastoids, are being developed …