Fine mapping of genome activation in bovine embryos by RNA sequencing

A Graf, S Krebs, V Zakhartchenko… - Proceedings of the …, 2014 - National Acad Sciences
During maternal-to-embryonic transition control of embryonic development gradually
switches from maternal RNAs and proteins stored in the oocyte to gene products generated …

[HTML][HTML] Single-cell transcriptome analyses reveal signals to activate dormant neural stem cells

Y Luo, V Coskun, A Liang, J Yu, L Cheng, W Ge, Z Shi… - Cell, 2015 - cell.com
The scarcity of tissue-specific stem cells and the complexity of their surrounding environment
have made molecular characterization of these cells particularly challenging. Through single …

Light-sheet microscopy and its potential for understanding developmental processes

Y Wan, K McDole, PJ Keller - Annual review of cell and …, 2019 - annualreviews.org
The ability to visualize and quantitatively measure dynamic biological processes in vivo and
at high spatiotemporal resolution is of fundamental importance to experimental …

Isoform-resolved transcriptome of the human preimplantation embryo

D Torre, NJ Francoeur, Y Kalma, I Gross Carmel… - Nature …, 2023 - nature.com
Human preimplantation development involves extensive remodeling of RNA expression and
splicing. However, its transcriptome has been compiled using short-read sequencing data …

Role of Tet proteins in enhancer activity and telomere elongation

F Lu, Y Liu, L Jiang, S Yamaguchi… - Genes & …, 2014 - genesdev.cshlp.org
DNA methylation at the C-5 position of cytosine (5mC) is one of the best-studied epigenetic
modifications and plays important roles in diverse biological processes. Iterative oxidation of …

[HTML][HTML] Mechanosensing and mechanoregulation of endothelial cell functions

Y Fang, D Wu, KG Birukov - Comprehensive physiology, 2019 - ncbi.nlm.nih.gov
Vascular endothelial cells (ECs) form a semiselective barrier for macromolecules and cell
elements regulated by dynamic interactions between cytoskeletal elements and cell …

Spatial transcriptome for the molecular annotation of lineage fates and cell identity in mid-gastrula mouse embryo

G Peng, S Suo, J Chen, W Chen, C Liu, F Yu, R Wang… - Developmental cell, 2016 - cell.com
Gastrulation of the mouse embryo entails progressive restriction of lineage potency and the
organization of the lineage progenitors into a body plan. Here we performed a high …

Chromatin accessibility landscape in human early embryos and its association with evolution

L Gao, K Wu, Z Liu, X Yao, S Yuan, W Tao, L Yi, G Yu… - Cell, 2018 - cell.com
The dynamics of the chromatin regulatory landscape during human early embryogenesis
remains unknown. Using DNase I hypersensitive site (DHS) sequencing, we report that the …

Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape

E Marco, RL Karp, G Guo, P Robson… - Proceedings of the …, 2014 - National Acad Sciences
We present single-cell clustering using bifurcation analysis (SCUBA), a novel computational
method for extracting lineage relationships from single-cell gene expression data and …

Single-cell reconstruction of follicular remodeling in the human adult ovary

X Fan, M Bialecka, I Moustakas, E Lam… - Nature …, 2019 - nature.com
The ovary is perhaps the most dynamic organ in the human body, only rivaled by the uterus.
The molecular mechanisms that regulate follicular growth and regression, ensuring ovarian …