The Baltimore classification of viruses 50 years later: how does it stand in the light of virus evolution?

EV Koonin, M Krupovic, VI Agol - Microbiology and Molecular …, 2021 - Am Soc Microbiol
SUMMARY Fifty years ago, David Baltimore published a brief conceptual paper delineating
the classification of viruses by the routes of genome expression. The six “Baltimore classes” …

Virus–host coevolution with a focus on animal and human DNA viruses

GL Kaján, A Doszpoly, ZL Tarján, MZ Vidovszky… - Journal of molecular …, 2020 - Springer
Viruses have been infecting their host cells since the dawn of life, and this extremely long-
term coevolution gave rise to some surprising consequences for the entire tree of life. It is …

DRAM for distilling microbial metabolism to automate the curation of microbiome function

M Shaffer, MA Borton, BB McGivern… - Nucleic acids …, 2020 - academic.oup.com
Microbial and viral communities transform the chemistry of Earth's ecosystems, yet the
specific reactions catalyzed by these biological engines are hard to decode due to the …

Transposon-encoded CRISPR–Cas systems direct RNA-guided DNA integration

SE Klompe, PLH Vo, TS Halpin-Healy, SH Sternberg - Nature, 2019 - nature.com
Conventional CRISPR–Cas systems maintain genomic integrity by leveraging guide RNAs
for the nuclease-dependent degradation of mobile genetic elements, including plasmids and …

Characterization of an archaeal virus-host system reveals massive genomic rearrangements in a laboratory strain

C Mercier, D Thies, L Zhong, MJ Raftery… - Frontiers in …, 2023 - frontiersin.org
Halophilic archaea (haloarchaea) are known to exhibit multiple chromosomes, with one
main chromosome and one or several smaller secondary chromosomes or megaplasmids …

[HTML][HTML] Recent insights into aquatic viruses: Emerging and reemerging pathogens, molecular features, biological effects, and novel investigative approaches

QY Zhang, F Ke, L Gui, Z Zhao - Water Biology and Security, 2022 - Elsevier
Aquatic viruses are naturally present in the aquatic environment and the number of viruses
is staggering. Various multicellular organisms in aquatic ecosystems may be infected, cross …

Viroids and the Origin of Life

K Moelling, F Broecker - International Journal of Molecular Sciences, 2021 - mdpi.com
Viroids are non-coding circular RNA molecules with rod-like or branched structures. They
are often ribozymes, characterized by catalytic RNA. They can perform many basic functions …

The potential role of endogenous viral elements in the evolution of bats as reservoirs for zoonotic viruses

EC Skirmuntt, M Escalera-Zamudio… - Annual Review of …, 2020 - annualreviews.org
Despite a small genome size, bats have comparable diversity of retroviral and non-retroviral
endogenous sequences to other mammals. These include Class I and Class II retroviral …

Epigenetics and transgenerational inheritance

K Moelling - The Journal of Physiology, 2024 - Wiley Online Library
Epigenetic modifications can alter the function of genes. The epigenetics changes are
caused by environmental effects, which lead to chemical modifications of the DNA or the …

Viruses as Living Systems—A Metacybernetic View

M Yolles, R Frieden - Systems, 2022 - mdpi.com
The debate over whether viruses are living organisms tends to be paradigmatically
determined. The metabolic paradigm denies that they are, while new research evidences …