Hydrogen bonding stabilizes globular proteins

JK Myers, CN Pace - Biophysical journal, 1996 - cell.com
It is clear that intramolecular hydrogen bonds are essential to the structure and stability of
globular proteins. It is not clear, however, whether they make a net favorable contribution to …

Structure of the YajR transporter suggests a transport mechanism based on the conserved motif A

D Jiang, Y Zhao, X Wang, J Fan… - Proceedings of the …, 2013 - National Acad Sciences
The major facilitator superfamily (MFS) is the largest family of secondary active transporters
and is present in all life kingdoms. Detailed structural basis of the substrate transport and …

A network of heterogeneous hydrogen bonds in GNRA tetraloops

FM Jucker, HA Heus, PF Yip, EHM Moors… - Journal of molecular …, 1996 - Elsevier
RNA hairpin loops containing a GNRA consensus sequence are the most frequently
occurring hairpins in a variety of prokaryotic and eukaryotic RNAs. These tetraloops play …

Lysozyme and α-lactalbumin: structure, function, and interrelationships

HA Mckenzie, FH White Jr - Advances in protein chemistry, 1991 - Elsevier
Publisher Summary This chapter considers both the structure and function of α-lactalbumin
and lysozyme in relation to each other, and also the potential significance of the studies in …

The folding of an enzyme: II. Substructure of barnase and the contribution of different interactions to protein stability

L Serrano, JT Kellis Jr, P Cann, A Matouschek… - Journal of molecular …, 1992 - Elsevier
Barnase is described anatomically in terms of its substructures and their mode of packing.
The surface area of hydrophobic residues buried on formation and packing of the structural …

A thymidine triphosphate shape analog lacking Watson–Crick pairing ability is replicated with high sequence selectivity

S Moran, RXF Ren, ET Kool - Proceedings of the National …, 1997 - National Acad Sciences
Compound 1 (F), a nonpolar nucleoside analog that is isosteric with thymidine, has been
proposed as a probe for the importance of hydrogen bonds in biological systems. Consistent …

Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides.

H Xiong, BL Buckwalter, HM Shieh… - Proceedings of the …, 1995 - National Acad Sciences
The tendency of a polypeptide chain to form alpha-helical or beta-strand secondary structure
depends upon local and nonlocal effects. Local effects reflect the intrinsic propensities of the …

Hidden thermodynamics of mutant proteins: a molecular dynamics analysis

J Gao, K Kuczera, B Tidor, M Karplus - Science, 1989 - science.org
A molecular dynamics simulation method is used to determine the contributions of individual
amino acid residues and solvent molecules to free energy changes in proteins. Its …

Lessons from the lysozyme of phage T4

WA Baase, L Liu, DE Tronrud, BW Matthews - Protein Science, 2010 - Wiley Online Library
An overview is presented of some of the major insights that have come from studies of the
structure, stability, and folding of T4 phage lysozyme. A major purpose of this review is to …

[图书][B] Molecular and cellular biophysics

MB Jackson - 2006 - books.google.com
Molecular and Cellular Biophysics provides advanced undergraduate and graduate
students with a foundation in the basic concepts of biophysics. Students who have taken …