[PDF][PDF] Parallel analysis of transcription, integration, and sequence of single HIV-1 proviruses

KB Einkauf, MR Osborn, C Gao, W Sun, X Sun, X Lian… - Cell, 2022 - cell.com
HIV-1-infected cells that persist despite antiretroviral therapy (ART) are frequently
considered" transcriptionally silent," but active viral gene expression may occur in some …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

[HTML][HTML] Decoding the role of satellite DNA in genome architecture and plasticity—An evolutionary and clinical affair

S Louzada, M Lopes, D Ferreira, F Adega, A Escudeiro… - Genes, 2020 - mdpi.com
Repetitive DNA is a major organizational component of eukaryotic genomes, being
intrinsically related with their architecture and evolution. Tandemly repeated satellite DNAs …

UniAligner: a parameter-free framework for fast sequence alignment

AV Bzikadze, PA Pevzner - Nature Methods, 2023 - nature.com
Even though the recent advances in 'complete genomics' revealed the previously
inaccessible genomic regions, analysis of variations in centromeres and other extra-long …

Automated assembly of centromeres from ultra-long error-prone reads

AV Bzikadze, PA Pevzner - Nature Biotechnology, 2020 - nature.com
Centromeric variation has been linked to cancer and infertility, but centromere sequences
contain multiple tandem repeats and can only be assembled manually from long error-prone …

Viral involvement in Alzheimer's disease

A Sait, C Angeli, AJ Doig, PJR Day - ACS Chemical Neuroscience, 2021 - ACS Publications
Alzheimer's disease (AD) is characterized by the presence of β-amyloid plaques (Aβ) and
neurofibrillary tangles (NFTs) in the brain. The prevalence of the disease is increasing and is …

Human chromosome‐specific aneuploidy is influenced by DNA‐dependent centromeric features

M Dumont, R Gamba, P Gestraud, S Klaasen… - The EMBO …, 2020 - embopress.org
Intrinsic genomic features of individual chromosomes can contribute to chromosome‐
specific aneuploidy. Centromeres are key elements for the maintenance of chromosome …

Mitotic chromosome condensation resets chromatin to safeguard transcriptional homeostasis during interphase

L Ramos-Alonso, P Holland… - Proceedings of the …, 2023 - National Acad Sciences
Mitotic entry correlates with the condensation of the chromosomes, changes in histone
modifications, exclusion of transcription factors from DNA, and the broad downregulation of …

[HTML][HTML] Dark matter of primate genomes: satellite DNA repeats and their evolutionary dynamics

SF Ahmad, W Singchat, M Jehangir, A Suntronpong… - Cells, 2020 - mdpi.com
A substantial portion of the primate genome is composed of non-coding regions, so-called
“dark matter”, which includes an abundance of tandemly repeated sequences called satellite …

[HTML][HTML] Functional Significance of Satellite DNAs: Insights From Drosophila

AS Shatskikh, AA Kotov, VE Adashev… - Frontiers in cell and …, 2020 - frontiersin.org
Since their discovery more than 60 years ago, satellite repeats are still one of the most
enigmatic parts of eukaryotic genomes. Being non-coding DNA, satellites were earlier …