The application of long-read sequencing in clinical settings

JB Oehler, H Wright, Z Stark, AJ Mallett, U Schmitz - Human genomics, 2023 - Springer
Long-read DNA sequencing technologies have been rapidly evolving in recent years, and
their ability to assess large and complex regions of the genome makes them ideal for clinical …

The report says what?: how the medical microbiologist can aid in the interpretation of next-generation sequencing results

C Costales, JD Bard - Clinics in Laboratory Medicine, 2024 - labmed.theclinics.com
As precision medicine evolves and access to complex infectious molecular testing in the
clinical environment continues to become more widely available, the medical microbiologist …

Do we still need Illumina sequencing data? Evaluating Oxford Nanopore Technologies R10. 4.1 flow cells and the Rapid v14 library prep kit for Gram negative …

N Lerminiaux, K Fakharuddin… - Canadian Journal of …, 2024 - cdnsciencepub.com
The best whole genome assemblies are currently built from a combination of highly accurate
short-read sequencing data and long-read sequencing data that can bridge repetitive and …

[PDF][PDF] Status check: next-generation sequencing for infectious-disease diagnostics

KG Rodino, PJ Simner - Journal of Clinical Investigation, 2024 - Am Soc Clin Investig
Status check: next-generation sequencing for infectious-disease diagnostics Page 1 The Journal
of Clinical Investigation VIEWPOINT 1 Status check: next-generation sequencing for …

Do we still need Illumina sequencing data?: Evaluating Oxford Nanopore Technologies R10. 4.1 flow cells and v14 library prep kits for Gram negative bacteria whole …

N Lerminiaux, K Fakharuddin, MR Mulvey, L Mataseje - biorxiv, 2023 - biorxiv.org
The best whole genome assemblies are currently built from a combination of highly accurate
short-read sequencing data and long-read sequencing data that can bridge repetitive and …

Longitudinal gut fungal alterations and potential fungal biomarkers for the progression of primary liver disease

S Jiang, L Xu, Y Chen, Z Shu, L Lv, Y Zhao, K Bi… - Science China Life …, 2024 - Springer
Liver disease, a major health concern worldwide, is a serious and progressive disorder.
Herein, we not only established a mouse model of DEN+ CCl4-induced primary liver …

BIChromET: A Chromogenic Culture Medium for Detection of Piperacillin/Tazobactam and Cefepime Resistance in Pseudomonas aeruginosa

JM Ortiz de la Rosa, Á Rodríguez-Villodres… - Antibiotics, 2023 - mdpi.com
Objectives: The BIChromET selective medium for detecting piperacillin-tazobactam (TZP)
and cefepime (FEP) resistant Pseudomonas aeruginosa was developed. Methods: The …

Comparative Evaluation of Commercial DNA Isolation Approaches for Nanopore-only Bacterial Genome Assembly and Plasmid Recovery

W Kruasuwan, P Sawatwong, P Jenjaroenpun… - 2024 - researchsquare.com
Abstract The advent of Oxford Nanopore Technologies has undergone significant
improvements in terms of sequencing costs, accuracy, and sequencing read lengths, making …

Isolation and Whole Genome Sequence Analysis of Cow Mastitis Candida tropicalis

W Fang, C Jiang, S Chen, X Guo, X Gao, P Liu, G Hu… - 2024 - researchsquare.com
Candida tropicalis (C. tropicalis) is a zoonotic pathogen that is widespread in the
environment and in recent years an increasing number of dairy cows have been infected …