Attractor metabolic networks

IM De la Fuente, JM Cortes, DA Pelta, J Veguillas - PLoS One, 2013 - journals.plos.org
Background The experimental observations and numerical studies with dissipative
metabolic networks have shown that cellular enzymatic activity self-organizes …

Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model

M Benítez, C Espinosa-Soto, P Padilla-Longoria… - BMC Systems …, 2008 - Springer
Background Dynamical models are instrumental for exploring the way information required
to generate robust developmental patterns arises from complex interactions among genetic …

Adenovirus E1A targets the DREF nuclear factor to regulate virus gene expression, DNA replication, and growth

S Radko, M Koleva, KMD James, R Jung… - Journal of …, 2014 - Am Soc Microbiol
The adenovirus E1A gene is the first gene expressed upon viral infection. E1A remodels the
cellular environment to maximize permissivity for viral replication. E1A is also the major …

Integrins as “functional hubs” in the regulation of pathological angiogenesis

L Contois, A Akalu, PC Brooks - Seminars in cancer biology, 2009 - Elsevier
It is well accepted that complex biological processes such as angiogenesis are not
controlled by a single family of molecules or individually isolated signaling pathways. In this …

Construction, comparison and evolution of networks in life sciences and other disciplines

DM Gysi, K Nowick - Journal of the Royal Society …, 2020 - royalsocietypublishing.org
Network approaches have become pervasive in many research fields. They allow for a more
comprehensive understanding of complex relationships between entities as well as their …

Bioactive peptides, networks and systems biology

K Boonen, JW Creemers, L Schoofs - Bioessays, 2009 - Wiley Online Library
Bioactive peptides are a group of diverse intercellular signalling molecules. Almost half a
century of research on this topic has resulted in an enormous amount of data. In this essay, a …

[HTML][HTML] Flower-mediated plant-butterfly interactions in an heterogeneous tropical coastal ecosystem

CA Martínez-Adriano, C Díaz-Castelazo… - PeerJ, 2018 - peerj.com
Background Interspecific interactions play an important role in determining species richness
and persistence in a given locality. However at some sites, the studies, especially for …

Implications of the solvent vehicles dimethylformamide and dimethylsulfoxide for establishing transcriptomic endpoints in the zebrafish embryo toxicity test

C Turner, A Sawle, M Fenske… - Environmental …, 2012 - Wiley Online Library
Current aquatic chemical testing guidelines recognize that solvents can potentially interfere
with the organism or environmental conditions of aquatic ecotoxicity tests and therefore …

Multiplatform serum metabolic phenotyping combined with pathway mapping to identify biochemical differences in smokers

MR Kaluarachchi, CL Boulangé, I Garcia-Perez… - Bioanalysis, 2016 - Taylor & Francis
Aim: Determining perturbed biochemical functions associated with tobacco smoking should
be helpful for establishing causal relationships between exposure and adverse events …

Apoptosis regulatory protein–protein interaction demonstrates hierarchical scale-free fractal network

S Nafis, P Kalaiarasan, RK Brojen Singh… - Briefings in …, 2015 - academic.oup.com
Dysregulation or inhibition of apoptosis favors cancer and many other diseases.
Understanding of the network interaction of the genes involved in apoptotic pathway …