Pathogenic variants in CRX have distinct cis-regulatory effects on enhancers and silencers in photoreceptors

JL Shepherdson, RZ Friedman, Y Zheng… - Genome …, 2024 - genome.cshlp.org
Dozens of variants in the gene for the homeodomain transcription factor (TF) cone-rod
homeobox (CRX) are linked with human blinding diseases that vary in their severity and age …

[HTML][HTML] Active learning of enhancer and silencer regulatory grammar in photoreceptors

RZ Friedman, A Ramu, S Lichtarge, CA Myers… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Cis-regulatory elements (CREs) direct gene expression in health and disease, and models
that can accurately predict their activities from DNA sequences are crucial for biomedicine …

Molecular basis of CRX/DNA recognition and stoichiometry at the Ret4 response element

D Srivastava, P Gowribidanur-Chinnaswamy, P Gaur… - Structure, 2024 - cell.com
Two retinal transcription factors, cone-rod homeobox (CRX) and neural retina leucine zipper
(NRL), cooperate functionally and physically to control photoreceptor development and …

Active learning of enhancer and silencer regulatory grammar in a developing neural tissue

RZ Friedman, A Ramu, S Lichtarge, Y Wu, L Tripp… - bioRxiv, 2023 - biorxiv.org
Cis-regulatory elements (CREs) direct gene expression in health and disease, and models
that can accurately predict their activities from DNA sequences are crucial for biomedicine …

The emergence and evolution of gene expression in genome regions replete with regulatory motifs

T Fuqua, Y Sun, A Wagner - bioRxiv, 2024 - biorxiv.org
Gene regulation is essential for life and controlled by regulatory DNA. Mutations can modify
the activity of regulatory DNA, and also create new regulatory DNA, a process called …

Promoter motifs facilitate as well as impede the emergence and evolution of gene expression

T Fuqua, Y Sun, A Wagner - 2024 - europepmc.org
Gene regulation is essential for life and controlled by regulatory DNA. Mutations can modify
the activity of regulatory DNA, and also create new regulatory DNA, a process called …