Single-cell RNA sequencing for the study of development, physiology and disease

SS Potter - Nature Reviews Nephrology, 2018 - nature.com
An ongoing technological revolution is continually improving our ability to carry out very high-
resolution studies of gene expression patterns. Current technology enables the global gene …

Biological sequence classification: A review on data and general methods

C Ao, S Jiao, Y Wang, L Yu, Q Zou - Research, 2022 - spj.science.org
With the rapid development of biotechnology, the number of biological sequences has
grown exponentially. The continuous expansion of biological sequence data promotes the …

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

JS Packer, Q Zhu, C Huynh, P Sivaramakrishnan… - Science, 2019 - science.org
INTRODUCTION During development, a single-cell zygote undergoes repeated cell
divisions to produce an embryo that contains many distinct cell types. This sequence of cell …

The origin and evolution of cell types

D Arendt, JM Musser, CVH Baker, A Bergman… - Nature Reviews …, 2016 - nature.com
Cell types are the basic building blocks of multicellular organisms and are extensively
diversified in animals. Despite recent advances in characterizing cell types, classification …

A survey of human brain transcriptome diversity at the single cell level

S Darmanis, SA Sloan, Y Zhang… - Proceedings of the …, 2015 - National Acad Sciences
The human brain is a tissue of vast complexity in terms of the cell types it comprises.
Conventional approaches to classifying cell types in the human brain at single cell …

Modeling injury and repair in kidney organoids reveals that homologous recombination governs tubular intrinsic repair

N Gupta, T Matsumoto, K Hiratsuka… - Science translational …, 2022 - science.org
Kidneys have the capacity for intrinsic repair, preserving kidney architecture with return to a
basal state after tubular injury. When injury is overwhelming or repetitive, however, that …

Design and computational analysis of single-cell RNA-sequencing experiments

R Bacher, C Kendziorski - Genome biology, 2016 - Springer
Single-cell RNA-sequencing (scRNA-seq) has emerged as a revolutionary tool that allows
us to address scientific questions that eluded examination just a few years ago. With the …

Advances and applications of single-cell sequencing technologies

Y Wang, NE Navin - Molecular cell, 2015 - cell.com
Single-cell sequencing (SCS) has emerged as a powerful new set of technologies for
studying rare cells and delineating complex populations. Over the past 5 years, SCS …

Transition states and cell fate decisions in epigenetic landscapes

N Moris, C Pina, AM Arias - Nature Reviews Genetics, 2016 - nature.com
Waddington's epigenetic landscape is an abstract metaphor frequently used to represent the
relationship between gene activity and cell fates during development. Over the past few …

Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development

M Adam, AS Potter, SS Potter - Development, 2017 - journals.biologists.com
Single-cell RNA-seq is a powerful technique. Nevertheless, there are important limitations,
including the technical challenges of breaking down an organ or tissue into a single-cell …