BEND3 safeguards pluripotency by repressing differentiation-associated genes

F Kurniawan, N Chetlangia… - Proceedings of the …, 2022 - National Acad Sciences
BEN domain–containing proteins are emerging rapidly as an important class of factors
involved in modulating gene expression, yet the molecular basis of how they regulate …

The protective role of dormant origins in response to replicative stress

L Courtot, JS Hoffmann, V Bergoglio - International journal of molecular …, 2018 - mdpi.com
Genome stability requires tight regulation of DNA replication to ensure that the entire
genome of the cell is duplicated once and only once per cell cycle. In mammalian cells …

Loss of Ezh2 function remodels the DNA replication initiation landscape

P Prorok, F Forouzanfar, N Murugarren, I Peiffer… - Cell Reports, 2023 - cell.com
In metazoan cells, DNA replication initiates from thousands of genomic loci scattered
throughout the genome called DNA replication origins. Origins are strongly associated with …

Metazoan DNA replication origins

O Ganier, P Prorok, I Akerman, M Méchali - Current opinion in cell biology, 2019 - Elsevier
DNA replication starts with the opening of DNA at sites called DNA replication origins. From
the single sequence-specific DNA replication origin of the small Escherichia coli genome, up …

Where and when to start: Regulating DNA replication origin activity in eukaryotic genomes

CSK Lee, M Weiβ, S Hamperl - Nucleus, 2023 - Taylor & Francis
In eukaryotic genomes, hundreds to thousands of potential start sites of DNA replication
named origins are dispersed across each of the linear chromosomes. During S-phase, only …

Genomic methods for measuring DNA replication dynamics

ML Hulke, DJ Massey, A Koren - Chromosome Research, 2020 - Springer
Genomic DNA replicates according to a defined temporal program in which early-replicating
loci are associated with open chromatin, higher gene density, and increased gene …

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

LS Pongor, JM Gross, R Vera Alvarez, J Murai… - Epigenetics & …, 2020 - Springer
Background Next-generation sequencing allows genome-wide analysis of changes in
chromatin states and gene expression. Data analysis of these increasingly used methods …

Order from clutter: selective interactions at mammalian replication origins

MI Aladjem, CE Redon - Nature Reviews Genetics, 2017 - nature.com
Mammalian chromosome duplication progresses in a precise order and is subject to
constraints that are often relaxed in developmental disorders and malignancies. Molecular …

Dynamic and combinatorial landscape of histone modifications during the intraerythrocytic developmental cycle of the malaria parasite

A Saraf, S Cervantes, EM Bunnik, N Ponts… - Journal of proteome …, 2016 - ACS Publications
A major obstacle in understanding the complex biology of the malaria parasite remains to
discover how gene transcription is controlled during its life cycle. Accumulating evidence …

Cellular reprogramming—a model for melanoma cellular plasticity

K Granados, J Poelchen, D Novak, J Utikal - International journal of …, 2020 - mdpi.com
Cellular plasticity of cancer cells is often associated with phenotypic heterogeneity and drug
resistance and thus remains a major challenge for the treatment of melanoma and other …